PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr4g0441941 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 208aa MW: 23259.1 Da PI: 7.4063 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 26.2 | 2.4e-08 | 7 | 29 | 3 | 25 |
YABBY 3 vfssseqvCyvqCnfCntilavs 25 +f+ +eq+CyvqC+fC til+v RcHm_v2.0_Chr4g0441941 7 LFDLPEQICYVQCGFCATILLVI 29 6899****************995 PP | |||||||
2 | YABBY | 150.5 | 1.6e-46 | 46 | 187 | 20 | 159 |
YABBY 20 tilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl. 101 +l+vsvP +sl+++vtvrCGhC+ llsvn+ kas +lla+ +++ +e +e vee + ++ + s s+++++ RcHm_v2.0_Chr4g0441941 46 PVLVVSVPCSSLSRLVTVRCGHCSCLLSVNMLKASflpfHLLASLG---QNVDQEKDQEICVEEVEEVKYPGLGDMRSPSMAVSNNs 129 69*****************************999865555555544...34444444444333333222222222222222222220 PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 +++e +++ + v++PPekrqr+Psaynrfikeeiqr+ka+nP+++h+eafs+aakn RcHm_v2.0_Chr4g0441941 130 ENEEYTNITLNHIVNKPPEKRQRAPSAYNRFIKEEIQRLKAENPSMTHKEAFSTAAKN 187 34455566666679*******************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence |
MTTLNGLFDL PEQICYVQCG FCATILLVIL NIIARLLLYI LFALQPVLVV SVPCSSLSRL 60 VTVRCGHCSC LLSVNMLKAS FLPFHLLASL GQNVDQEKDQ EICVEEVEEV KYPGLGDMRS 120 PSMAVSNNSE NEEYTNITLN HIVNKPPEKR QRAPSAYNRF IKEEIQRLKA ENPSMTHKEA 180 FSTAAKNVGV PFSLLNHLTI LISKHRNS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G23420.1 | 8e-50 | YABBY family protein |