PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0440751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 329aa    MW: 37243.2 Da    PI: 4.4784
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0440751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-1887140356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             k++++t +q++ Le+ Fe ++++  +++ eLAk+l+L+ rqV +WFqNrRa+ k
  RcHm_v2.0_Chr4g0440751  87 KKRRLTVDQVQFLEKNFELENKLEPDRKVELAKELSLEPRQVAIWFQNRRARFK 140
                             56689***********************************************98 PP
2HD-ZIP_I/II125.81.9e-4087178293
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             kkrrl+ +qv++LE++Fe e+kLep+rKvela+eL l+prqva+WFqnrRAR+ktkqlEkdy++L+++yd+lk+++++L k++ +L+
  RcHm_v2.0_Chr4g0440751  87 KKRRLTVDQVQFLEKNFELENKLEPDRKVELAKELSLEPRQVAIWFQNRRARFKTKQLEKDYDSLRASYDKLKADHDKLLKQNGNLK 173
                             9************************************************************************************** PP

             HD-ZIP_I/II  89 eelke 93 
                             +e+++
  RcHm_v2.0_Chr4g0440751 174 NEIDS 178
                             99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MVCGKRYGAS SDMNAVFQHE RPPCSSDVLE SLWIPTSSSS FHGSNSMVNF ENVSGGDSMD  60
KSLFQPIDKE ENGDDDFEGS LLHQPGKKRR LTVDQVQFLE KNFELENKLE PDRKVELAKE  120
LSLEPRQVAI WFQNRRARFK TKQLEKDYDS LRASYDKLKA DHDKLLKQNG NLKNEIDSLK  180
DELLLREKGK ENLESNDDGI NSPKMDIQNA IPNNTADVYV PIMVCKQEDA SSAKSDVFDS  240
DSPHCTENHS LLLEPTTTAD SSHGFEPADH SDFSQDNEDD NSLTRSLLHL PPPCFLKLED  300
ICYDDPPAIS SNFGLIPVED QHPFGFWPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARFKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.13e-29HD-ZIP family protein