PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0440511
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Whirly
Protein Properties Length: 270aa    MW: 29859.9 Da    PI: 9.9441
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0440511genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly2188.9e-68932311139
                  Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsne 87 
                             s+yk+kaal+v++++p+f+aldsg++k++r+G++ll++a+a+++r ydW++kq+f+ls+te++++v+l+++esceffhdp++++s+e
  RcHm_v2.0_Chr4g0440511  93 SIYKGKAALTVEPKAPEFTALDSGAFKMSREGFVLLQFAPAAGVRVYDWSRKQVFSLSVTEIGSIVSLGARESCEFFHDPFKGKSEE 179
                             7************************************************************************************** PP

                  Whirly  88 GkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                             Gkvrk+lkvePlpdGsG f+nlsv+n+l++ +e++++Pv++aefavl+s+++
  RcHm_v2.0_Chr4g0440511 180 GKVRKVLKVEPLPDGSGRFFNLSVQNKLINLEENIYIPVTRAEFAVLNSAFN 231
                             ************************************************9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MLKLEYSLSS PVAVQNPNHS LPSKARVFST NSFGFAPNST SFGKRRLALK CRQSEYFEQQ  60
RLTPPTPPST AASAAQSPSG ATAVPARFYV GHSIYKGKAA LTVEPKAPEF TALDSGAFKM  120
SREGFVLLQF APAAGVRVYD WSRKQVFSLS VTEIGSIVSL GARESCEFFH DPFKGKSEEG  180
KVRKVLKVEP LPDGSGRFFN LSVQNKLINL EENIYIPVTR AEFAVLNSAF NYILPYLIGW  240
HAYANSIKPE DMSRVNNATP RYGGDFEWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-128Whirly family protein