PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0440391

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 555aa MW: 60358.9 Da PI: 7.8737

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0440391	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.6	1.7e-30	202	260	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+ RcHm_v2.0_Chr4g0440391 202 NDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCAEDMSILITTYEGNHNHP 260 8************************999**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MPMQEADDEL ELAKAEMGEV REENKRLKVL LSQIVKDYQE LQMHFLDVIQ KEETNKKSMD 60 TSSTADHQGT VSAEADELVS LSLGRTSSST STHDHQLRKD HHEMMKKTSR DDYYGVMNEA 120 GLALELGCRS FEPAAADHET MKVNSSSEIN SSAADPKEDE VTKIWPPGKM LKTRDDDVSQ 180 QQTHLKKARV SVRARCDAPT LNDGCQWRKY GQKIAKGNPC PRAYYRCTVS PSCPVRKQVQ 240 RCAEDMSILI TTYEGNHNHP LPMSATAMAS TTSAAASMLQ SHSSTSQQGL VNSTTAPIST 300 STSNLHGHGP NYFTNSLSQN SSRLLPQSQF YFPNSSISTN NSHPTITLDL TAPSPSHFGL 360 RFPSGLPRYS SSTSLNFSSS SSSSFDHNTL LQTPNWINNP AAAGYFNYGT VLSHQNRMNQ 420 AVGGSSLNNG KQPFQEPNFY QSYIKNSQKA APAPPQHHLF TETLTTATKA ITSNPKFQSA 480 LAAALTSFVG ANGGTSGAVR ETSHIVNGSS STESSGLKLK WGESLTPINP IYPSTQKGIG 540 CASSGYLNKS SSPLN

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MPMQEADDEL ELAKAEMGEV REENKRLKVL LSQIVKDYQE LQMHFLDVIQ KEETNKKSMD  60
TSSTADHQGT VSAEADELVS LSLGRTSSST STHDHQLRKD HHEMMKKTSR DDYYGVMNEA  120
GLALELGCRS FEPAAADHET MKVNSSSEIN SSAADPKEDE VTKIWPPGKM LKTRDDDVSQ  180
QQTHLKKARV SVRARCDAPT LNDGCQWRKY GQKIAKGNPC PRAYYRCTVS PSCPVRKQVQ  240
RCAEDMSILI TTYEGNHNHP LPMSATAMAS TTSAAASMLQ SHSSTSQQGL VNSTTAPIST  300
STSNLHGHGP NYFTNSLSQN SSRLLPQSQF YFPNSSISTN NSHPTITLDL TAPSPSHFGL  360
RFPSGLPRYS SSTSLNFSSS SSSSFDHNTL LQTPNWINNP AAAGYFNYGT VLSHQNRMNQ  420
AVGGSSLNNG KQPFQEPNFY QSYIKNSQKA APAPPQHHLF TETLTTATKA ITSNPKFQSA  480
LAAALTSFVG ANGGTSGAVR ETSHIVNGSS STESSGLKLK WGESLTPINP IYPSTQKGIG  540
CASSGYLNKS SSPLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-61	WRKY family protein