PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0440141
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 304aa    MW: 34417.4 Da    PI: 6.5119
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0440141genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.1e-1886139356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  RcHm_v2.0_Chr4g0440141  86 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 139
                             456899***********************************************9 PP
2HD-ZIP_I/II131.72.8e-4285177193
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k++ne+L++++++L
  RcHm_v2.0_Chr4g0440141  85 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQFDAIKADNESLQAQNQKL 171
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reelke 93 
                             ++e+++
  RcHm_v2.0_Chr4g0440141 172 HAEIQA 177
                             **9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MTGNGMAFFQ ANFMLQSPHH EDHHDHQQPP TSLNPLLPSC TPQDFHGVAS FLGKRSMSFS  60
GIELGTEEGH GEDDLSDDGS QAGGEKKRRL NMEQVKTLEK NFELGNKLEP ERKMQLARAL  120
GLQPRQIAIW FQNRRARWKT KQLEKDYDIL KRQFDAIKAD NESLQAQNQK LHAEIQALKN  180
REPAESINLN IKETEGSCSN RSENNSAEIK LDISRTPPAI DSPLSSHQNP IITSRSLFPT  240
SAAATIRPSG IQQLFHQNPS SRPELLQCSQ KIDHIVKEES LSNMFCGIDD QSGFWPWLEQ  300
HQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-117HD-ZIP family protein