PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0440011
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family TCP
Protein Properties Length: 425aa    MW: 44862.5 Da    PI: 7.0942
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0440011genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.33.8e-40672462119
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                             ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s+
  RcHm_v2.0_Chr4g0440011  67 PPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSA 153
                             789******************************************************************999866666666664444 PP

                     TCP  88 g.............................................................kaaksaakskksqksaasalnlake 113
                             +                                                             +a+++   + ++++sa+++l+l++ 
  RcHm_v2.0_Chr4g0440011 154 PshlrtsgyfnptnsssnllfgggasqlmeeqqrgrvlfpgvdlspssmllnfnsgnvnamlEAKQEMRDQGNNNTSATTTLDLDHM 240
                             455556666666667777888888888888888888888888888888888888888888854444444777777777777888887 PP

                     TCP 114 srakar 119
                             sr+ ++
  RcHm_v2.0_Chr4g0440011 241 SREGSS 246
                             775444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MIMEGDENGI RIRPNFPLQF LDKRKEEEAA ASSSSYGGAE PAGSSKAVVV ARSTSDVSSI  60
QEKKPAPPKR TSTKDRHTKV DGRGRRIRMP ATCAARVFQL TRELGHKSDG ETIEWLLQQA  120
EPAVIAATGT GTIPANFTSL NISLRSSGSS MSAPSHLRTS GYFNPTNSSS NLLFGGGASQ  180
LMEEQQRGRV LFPGVDLSPS SMLLNFNSGN VNAMLEAKQE MRDQGNNNTS ATTTLDLDHM  240
SREGSSIGRK RRPDEQDLLS SSSSHTSHSQ LGNYMLQSST GSIPASQSTI PATFWMVANN  300
PSSNNSNQGQ AGNMSGGGGG GAHLHHQDPP MWTFPTTVNG NHGLHFMNFA PPMAILPSQV  360
QLGTSVLSTG GGGGGGAMAD SHLGMLAALN AYRPILSGGA PVNGQHPSDD ADEGQHDEHS  420
NASQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.18e-56TCP family protein