PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0439611

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Dof

Protein Properties

Length: 531aa MW: 56830.5 Da PI: 6.0255

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0439611	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.5e-39	161	221	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rnvPvG+grrknk++s RcHm_v2.0_Chr4g0439611 161 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGIMRNVPVGAGRRKNKNAS 221 7899******************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
MSENEISPTI KLFGKTIPLA SAPHNGHEVP TNDDPPCGAS DSAVDSKISA AAAAAAASGG 60 GAVEEEDCSV KLPCCSETTS PEDQENKETI SGKEFTADKE EDNPLDQFTE DLKPPTTSSG 120 ISENPKTPSA DRETSVSLKS SKNGEQSDET SCSQDKTLKK PDKILPCPRC NSMDTKFCYY 180 NNYNVNQPRH FCKNCQRYWT AGGIMRNVPV GAGRRKNKNA SSASHYRHML MSDALQTAHA 240 TAAAASNGAH NPTLGRNGTV LTFGSDSPLC ESMASVLNLA EKTQNSLQNG FHVPDQQRIL 300 VPSITGDNGD DQSSGSSNVT ASNSSEGGCK AGIQEPAVHN CQSFSPHQVP CFPGSPWPYP 360 WNSPQWTSAM PPPAFFHSGF PISFYPAPPY WGCTGPGSWN VPCNSPPSSN LSHCGTSSGP 420 NSPTLGKHPR DGDILSQASS QKEESSRDNR SDRCVLIPKT LRIDDPSEAA KSSIWETLGI 480 KNEKGNSINE GGIFKSFESK GHEKRQVVEQ SSVLQANPAA FSRSLNFREI S

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

MSENEISPTI KLFGKTIPLA SAPHNGHEVP TNDDPPCGAS DSAVDSKISA AAAAAAASGG  60
GAVEEEDCSV KLPCCSETTS PEDQENKETI SGKEFTADKE EDNPLDQFTE DLKPPTTSSG  120
ISENPKTPSA DRETSVSLKS SKNGEQSDET SCSQDKTLKK PDKILPCPRC NSMDTKFCYY  180
NNYNVNQPRH FCKNCQRYWT AGGIMRNVPV GAGRRKNKNA SSASHYRHML MSDALQTAHA  240
TAAAASNGAH NPTLGRNGTV LTFGSDSPLC ESMASVLNLA EKTQNSLQNG FHVPDQQRIL  300
VPSITGDNGD DQSSGSSNVT ASNSSEGGCK AGIQEPAVHN CQSFSPHQVP CFPGSPWPYP  360
WNSPQWTSAM PPPAFFHSGF PISFYPAPPY WGCTGPGSWN VPCNSPPSSN LSHCGTSSGP  420
NSPTLGKHPR DGDILSQASS QKEESSRDNR SDRCVLIPKT LRIDDPSEAA KSSIWETLGI  480
KNEKGNSINE GGIFKSFESK GHEKRQVVEQ SSVLQANPAA FSRSLNFREI S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.1	9e-99	Dof family protein