PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0439551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 352aa    MW: 39902.2 Da    PI: 7.5592
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0439551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.2e-21953145
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                            kr en+  rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk
  RcHm_v2.0_Chr4g0439551  9 KRLENTNGRQATYAKRKHGIMKKANELSILCDIDIVLLMFSPTGK 53
                            689****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MGRVKLKIKR LENTNGRQAT YAKRKHGIMK KANELSILCD IDIVLLMFSP TGKPSLCSGK  60
RSSIEEVIAK FSQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS SQIVEDLSNQ  120
SRLLQTQLSE IKKRLSCWMN PDKINSVDQL GQMEDSIRES LNQIRTHKEN LQKQQLMSLE  180
CTSQFQNGLH IPFSISTEQQ LQPLPWIPSN ENRHIVLPED PNLLPHRDIE CSASSSFGSY  240
SGYLGTGKSP EISNSGQENV ILNDLSRTAP LRLQLGGQFS SYLPYNLNML TDTKFQQPTE  300
MSPQENPVEY HVNGSFEAPR PDFFTTQHSW ASTSGPCAVT MFDEHLYSQQ TN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-112M-type_MADS family protein