PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0439041

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 516aa MW: 56371.9 Da PI: 7.332

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0439041	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.7	5.8e-34	232	288	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers d++++ei+Y+geHnh+ RcHm_v2.0_Chr4g0439041 232 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSV-DGQITEIIYKGEHNHQ 288 8**************************************.*************8 PP
2	WRKY	107.4	6.9e-34	402	460	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+ RcHm_v2.0_Chr4g0439041 402 LDDGYRWRKYGQKVVKGNPYPRSYYKCTFQGCNVRKHVERAATDPKAVITTYEGKHNHD 460 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MAGNEEEHRQ PPSTSSSAPS SRPPHPTITL PPRTCFETMF NNNNSGTGGN TGAGLGFSPG 60 PMTLVSSFFS DGEDCKSFSQ LLAGAMLSPA DRAAFPPLED RNSGDDSSDF RFKNGPAGMS 120 IGPLSPMFPA GFLDSPGGLF SPGQGAFGMT HQQALAQVTA QASQSQSYTF HIPNEHSTSK 180 TQLPIFTSST TPPQEMPSEI PDSGVTLKES SDISHSEQRS QPSSLTVDKP NDDGYNWRKY 240 GQKQVKGSEF PRSYYKCTHP SCPVKKKVER SVDGQITEII YKGEHNHQRP QSKRPKDSGN 300 QNGNVQVNHD LASQVHGGNL NKSKEGTYSM SKLGQESSQA ISGTSDSEEV GDAETKVEEK 360 DEDEPAAKRR NMEVRHSEPA SSHRTVTEPR IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP 420 YPRSYYKCTF QGCNVRKHVE RAATDPKAVI TTYEGKHNHD VPASKSGSHY AANNNASNLR 480 SGNPGTEKHA SVSKMDPRNN DQQHVARLRL KEEQIT

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MAGNEEEHRQ PPSTSSSAPS SRPPHPTITL PPRTCFETMF NNNNSGTGGN TGAGLGFSPG  60
PMTLVSSFFS DGEDCKSFSQ LLAGAMLSPA DRAAFPPLED RNSGDDSSDF RFKNGPAGMS  120
IGPLSPMFPA GFLDSPGGLF SPGQGAFGMT HQQALAQVTA QASQSQSYTF HIPNEHSTSK  180
TQLPIFTSST TPPQEMPSEI PDSGVTLKES SDISHSEQRS QPSSLTVDKP NDDGYNWRKY  240
GQKQVKGSEF PRSYYKCTHP SCPVKKKVER SVDGQITEII YKGEHNHQRP QSKRPKDSGN  300
QNGNVQVNHD LASQVHGGNL NKSKEGTYSM SKLGQESSQA ISGTSDSEEV GDAETKVEEK  360
DEDEPAAKRR NMEVRHSEPA SSHRTVTEPR IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP  420
YPRSYYKCTF QGCNVRKHVE RAATDPKAVI TTYEGKHNHD VPASKSGSHY AANNNASNLR  480
SGNPGTEKHA SVSKMDPRNN DQQHVARLRL KEEQIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-152	WRKY family protein