PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0437891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | YABBY | ||||||||
Protein Properties | Length: 184aa MW: 20390.1 Da PI: 8.7615 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 171.6 | 5.1e-53 | 9 | 167 | 1 | 165 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaaeshldeslkeelleelkveeenlksn 85 +d+++ se++Cyv+CnfCnt+lav +P + ++ +vtv+CGhC++l ++ + ++ ql++a ++ + + +l + ++++++ RcHm_v2.0_Chr4g0437891 9 MDLVQPSEHLCYVRCNFCNTVLAVGLPCKRMMDTVTVKCGHCSNLSFLTTRPNNpiQLQPAPHQCQIND---YPTTL-TLHQSFSTD 91 578999**************************************9888877766546777766633333...33333.334556666 PP YABBY 86 vekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 + +s+s+s ++ + e+ ++p++p v +PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +P+ RcHm_v2.0_Chr4g0437891 92 SRRGHSSSSSSPT----SLESPSSPKAPFVCKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYPT 167 6666666666555....335677899999*************************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MNLEDKVTMD LVQPSEHLCY VRCNFCNTVL AVGLPCKRMM DTVTVKCGHC SNLSFLTTRP 60 NNPIQLQPAP HQCQINDYPT TLTLHQSFST DSRRGHSSSS SSPTSLESPS SPKAPFVCKP 120 PEKKHRLPSA YNRFMKEEIQ RIKAANPEIP HREAFSAAAK NWARYPTPSA TAASDSGSSN 180 KLNE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 2e-57 | YABBY family protein |