PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0437871

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 504aa MW: 56457.8 Da PI: 7.3165

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0437871	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.2	3.5e-41	166	242	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++dls+ keyh+rh+vC++hsk++ v+v+g+eqrfCqqCsrfh l efD+ krsCrrrLa+hn+rrrk+q RcHm_v2.0_Chr4g0437871 166 TCQVHGCNMDLSSSKEYHKRHRVCDAHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDDVKRSCRRRLAGHNQRRRKPQ 242 6**************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MEPWSFGSEG KGFLLADEMD IPIDAFARST KAFLEWDNKT CFNFDKESVE NMEFMDLGLP 60 DTVREPCHGN QVVDVLSGVA GVGCNDSSNN TVASPTCLMT SSSSWGEGES GSKFSSPVYE 120 SSSQDSSLIA LKLGRLADSK YGQDSQHLKE RSKRARTKGP HYQTLTCQVH GCNMDLSSSK 180 EYHKRHRVCD AHSKTAIVIV NGIEQRFCQQ CSRFHLLAEF DDVKRSCRRR LAGHNQRRRK 240 PQLDTFDCKS RKWLQSYQGI GYLGTSLPKR TPFVFSDILP GGILYPEESN EYGHIKTEDE 300 STYSQCVTPI TNRPLPPNSF LQLHGLGKQH ASEVPSSGSE FSVFDSASHV QKASGASTYQ 360 GALSLLSAQS QSSIHSARNQ VATPLQIQRT HHGAGQINER PSTVKPLEKY GRNRSFPCRI 420 NSMGTDQMDS VMISDSSHAV DFQLHTDRVF QESARFSHKY HLSPENGPTF DLLQLSSHFQ 480 RVEQERNFLQ IKHEQGDFYC FPQS

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MEPWSFGSEG KGFLLADEMD IPIDAFARST KAFLEWDNKT CFNFDKESVE NMEFMDLGLP  60
DTVREPCHGN QVVDVLSGVA GVGCNDSSNN TVASPTCLMT SSSSWGEGES GSKFSSPVYE  120
SSSQDSSLIA LKLGRLADSK YGQDSQHLKE RSKRARTKGP HYQTLTCQVH GCNMDLSSSK  180
EYHKRHRVCD AHSKTAIVIV NGIEQRFCQQ CSRFHLLAEF DDVKRSCRRR LAGHNQRRRK  240
PQLDTFDCKS RKWLQSYQGI GYLGTSLPKR TPFVFSDILP GGILYPEESN EYGHIKTEDE  300
STYSQCVTPI TNRPLPPNSF LQLHGLGKQH ASEVPSSGSE FSVFDSASHV QKASGASTYQ  360
GALSLLSAQS QSSIHSARNQ VATPLQIQRT HHGAGQINER PSTVKPLEKY GRNRSFPCRI  420
NSMGTDQMDS VMISDSSHAV DFQLHTDRVF QESARFSHKY HLSPENGPTF DLLQLSSHFQ  480
RVEQERNFLQ IKHEQGDFYC FPQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-46	SBP family protein