PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0437851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28378.2 Da PI: 9.3063 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.1 | 7.5e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS LCdaeva+iifss+gklye++s RcHm_v2.0_Chr4g0437851 9 KRIENKINRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSSRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 86 | 7.6e-29 | 82 | 173 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 + +++++s ++e+++Lk ++e Lqr+qR++lGedLe+L+ keL+qLe++L+ slk++Rs++++++leq+++lq+kek+l e+n +Lr RcHm_v2.0_Chr4g0437851 82 QPAQNTQSRYEEYENLKLKVEVLQRTQRRFLGEDLENLDTKELEQLENELDLSLKRVRSRQSQHILEQLSDLQRKEKMLLEANDELR 168 567999********************************************************************************* PP K-box 96 kklee 100 +klee RcHm_v2.0_Chr4g0437851 169 RKLEE 173 **987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSS RGKLYEFCSG 60 PSMEKTLEKY RRYTYAALEA GQPAQNTQSR YEEYENLKLK VEVLQRTQRR FLGEDLENLD 120 TKELEQLENE LDLSLKRVRS RQSQHILEQL SDLQRKEKML LEANDELRRK LEESNEGLQR 180 SWKAKQLSIP NGHPSTAQSD QGLFERLQCN NKALQIGHSR EVTTEVNVAT STQTRSGFVP 240 EWML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.2 | 3e-88 | MIKC_MADS family protein |