PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0437841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28881.8 Da PI: 8.7092 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.7 | 4.9e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+ RcHm_v2.0_Chr4g0437841 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAQVALIVFSNKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 100.2 | 2.8e-33 | 78 | 174 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 ++ ++ + + + +++ e+a+Lk ++e Lqr++Rh+lGedL+sLs+ke+q+LeqqL++slk+iRs+Kn+l++e+++elq+kek++qe+ RcHm_v2.0_Chr4g0437841 78 RQLVEPDLESQGNWTFEHARLKVKVELLQRNLRHYLGEDLDSLSIKEIQSLEQQLDNSLKQIRSRKNQLMHESMSELQRKEKAMQEQ 164 5666656667799************************************************************************** PP K-box 91 nkaLrkklee 100 n+ L+kk++e RcHm_v2.0_Chr4g0437841 165 NNLLSKKIKE 174 *******987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AQVALIVFSN KGKLFEYSTD 60 SCMENILERY ERYSYAERQL VEPDLESQGN WTFEHARLKV KVELLQRNLR HYLGEDLDSL 120 SIKEIQSLEQ QLDNSLKQIR SRKNQLMHES MSELQRKEKA MQEQNNLLSK KIKEKEKNVA 180 EAQEVHNWEQ QQQQQNHGLN LVAQAPLPCL NMGGTQQNDQ FLQVRRNQLD LTLEPSLYSC 240 HLGCFAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-113 | MIKC_MADS family protein |