PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0437041

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 548aa MW: 58964.8 Da PI: 4.9332

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0437041	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.8e-09	364	412	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq RcHm_v2.0_Chr4g0437041 364 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 412 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MDMSEKDKFE LENRNEEPMN YSPSMTYGFG GSNLTNASMD LVPTGNSMAD SKEDLIGSSS 60 QPSASMVESF SPALWDHPTN AQNMGFCDIN GQTSASTSNT MGIRKGIPAS LRSGIDRPLD 120 MCWNPPNSML KGGIFLPNGP AGMLPQSLSQ FPADSGFIER AARFSCFNGG NFSDMMNPFV 180 VPESMSLYSK GGGMMQWAVA GQGTKAMSSN ELNQVGDASN EVSLPIDHGA TDGSPLKNEK 240 KSESLVKSHD EAKNAMDGSG NESDEADFSG GAEEPSMMED TGVGPSSKGS KKRKRSGQAN 300 ELDQTKIAAH QSVESTKDDT EMVQKGASTT NKTTGRLVKQ GSQTSDPPKE EYIHVRARRG 360 QATNSHSLAE RVRREKISER MKFLQDLVPG CSKVTGKAVM LDEIINYVQS LQRQVEFLSM 420 KLATVNPRLD LNIESLLEKD ILQSRVGPSS SMGFSPDMHI AYPPLHPSQS GLIQAGLPGM 480 GSSSDLLRRA MGSQMAPMTG GFKEPSQLSN VWEDELQNVF QMSYGTGTPS NSQDVDGSGT 540 PGHMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MDMSEKDKFE LENRNEEPMN YSPSMTYGFG GSNLTNASMD LVPTGNSMAD SKEDLIGSSS  60
QPSASMVESF SPALWDHPTN AQNMGFCDIN GQTSASTSNT MGIRKGIPAS LRSGIDRPLD  120
MCWNPPNSML KGGIFLPNGP AGMLPQSLSQ FPADSGFIER AARFSCFNGG NFSDMMNPFV  180
VPESMSLYSK GGGMMQWAVA GQGTKAMSSN ELNQVGDASN EVSLPIDHGA TDGSPLKNEK  240
KSESLVKSHD EAKNAMDGSG NESDEADFSG GAEEPSMMED TGVGPSSKGS KKRKRSGQAN  300
ELDQTKIAAH QSVESTKDDT EMVQKGASTT NKTTGRLVKQ GSQTSDPPKE EYIHVRARRG  360
QATNSHSLAE RVRREKISER MKFLQDLVPG CSKVTGKAVM LDEIINYVQS LQRQVEFLSM  420
KLATVNPRLD LNIESLLEKD ILQSRVGPSS SMGFSPDMHI AYPPLHPSQS GLIQAGLPGM  480
GSSSDLLRRA MGSQMAPMTG GFKEPSQLSN VWEDELQNVF QMSYGTGTPS NSQDVDGSGT  540
PGHMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	291	296	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.1	1e-130	bHLH family protein