PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0435921

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 448aa MW: 50039.1 Da PI: 9.8474

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0435921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	144.7	6.6e-45	94	246	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssa 70 gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+skti+WL++++k aikel + s RcHm_v2.0_Chr4g0435921 94 SGKKDRHSKICTAQGPRDRRMRLSVQIARKFFDLQDMLGFDKASKTIDWLFTKSKSAIKELKQHvvlpscsistigtakhinS---- 176 68************************************************************9988877776654433321.... PP TCP 71 sec....eaesssssasnsssg.............kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 e++ + +++ + +++++k++ + k sr +ararar+rtrekmri+++ RcHm_v2.0_Chr4g0435921 177 --LststESN-----------EvvsktmqthcalkGESSISRMNRDPKKNTRRLCLVGKGSRDEARARARDRTREKMRIRSSC 246 ..11111111...........122222334455643344444555666666666777889*****************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MYPLLGNNTT TNDENSSSQP HHPHLYDYNS PFLQDHDGVV LSYLLSQQQF LMIDTNSSQS 60 AEISVAASNQ GLTEEKIHSS KKKKKAAAPR KRSSGKKDRH SKICTAQGPR DRRMRLSVQI 120 ARKFFDLQDM LGFDKASKTI DWLFTKSKSA IKELKQHVVL PSCSISTIGT AKHINSLSTS 180 TESNEVVSKT MQTHCALKGE SSISRMNRDP KKNTRRLCLV GKGSRDEARA RARDRTREKM 240 RIRSSCQTSQ DEANPKDLGL CFGEEAEKHI SRELLEQGGT NSMMKSNADD HKTLMGRSIS 300 ALRSRPSFED EGGEFPGFTG NWATKMQSFH RKMTTNVIKS FTGNNVLQVE NPSTPMMGIT 360 TKQQEPSSTT NSLLSFNSSN SQEQKYSGTS ISITPIPKPN AQELLNPCSI NFMPNQDQDQ 420 DHDHNPNSIF ITTSISQDQN PGPFLKFN

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MYPLLGNNTT TNDENSSSQP HHPHLYDYNS PFLQDHDGVV LSYLLSQQQF LMIDTNSSQS  60
AEISVAASNQ GLTEEKIHSS KKKKKAAAPR KRSSGKKDRH SKICTAQGPR DRRMRLSVQI  120
ARKFFDLQDM LGFDKASKTI DWLFTKSKSA IKELKQHVVL PSCSISTIGT AKHINSLSTS  180
TESNEVVSKT MQTHCALKGE SSISRMNRDP KKNTRRLCLV GKGSRDEARA RARDRTREKM  240
RIRSSCQTSQ DEANPKDLGL CFGEEAEKHI SRELLEQGGT NSMMKSNADD HKTLMGRSIS  300
ALRSRPSFED EGGEFPGFTG NWATKMQSFH RKMTTNVIKS FTGNNVLQVE NPSTPMMGIT  360
TKQQEPSSTT NSLLSFNSSN SQEQKYSGTS ISITPIPKPN AQELLNPCSI NFMPNQDQDQ  420
DHDHNPNSIF ITTSISQDQN PGPFLKFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-31	TCP family protein