PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0435771
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family RAV
Protein Properties Length: 366aa    MW: 40648.7 Da    PI: 9.694
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0435771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.8e-1466114155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  RcHm_v2.0_Chr4g0435771  66 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 114
                             89****9888.8*********3.....5**********99*************98 PP
2B31016.7e-32198297196
                             EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+
  RcHm_v2.0_Chr4g0435771 198 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGSTCKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQ 284
                             89***************************97778899************************************************** PP

                             E-SSSEE..EEEE CS
                      B3  84 ldgrsefelvvkv 96 
                             ++   +++l++ +
  RcHm_v2.0_Chr4g0435771 285 RSTGPDKQLYIDW 297
                             8866777777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MDITSSTTDE STSSELSMSI SPPPRPNNKL SSSPPQSLCR VGSGASSVIL DSENGIEAES  60
RKLQSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AARAYDVAAQ RFRGRDAVTN  120
FKPLAESTDN DDDEIEAAFL NSHSKSEIVD MLRKHTYNDE LEQSKRNLGF DANGKRRPRG  180
ESGPMGPDRA AKAREQLFEK AVTPSDVGKL NRLVIPKQHA EKHFPLQNGS TCKGVLLNFE  240
DVGGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKNLKAGDI VSFQRSTGPD KQLYIDWKAR  300
STGPNPVQSG PVQMVRLFGV NIFKIPGSGS PGVDAPIGCN ALGKRMREIE LLELEFSKKP  360
RIIGAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-149RAV family protein