PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0435741

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 287aa MW: 32416.7 Da PI: 7.3147

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0435741	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.9	9.2e-07	104	123	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp Cgk+F+r n++ H+ RcHm_v2.0_Chr4g0435741 104 FSCPVCGKTFNRYNNMQMHM 123 89*****************9 PP
2	zf-C2H2	14	0.00015	189	211	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ RcHm_v2.0_Chr4g0435741 189 FGCRKCGKPFAVRGDWRTHEKNC 211 56*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MHHQKDEDDS VFLTLGPPGQ PVHRHILYHQ QSSSSSSTQP HHQNPNYSTN HEDGVTVALH 60 IGQPFTTSGP SSNNNNNNVH IGAPMEGQYW IPSPAQILVG PTQFSCPVCG KTFNRYNNMQ 120 MHMWGHGSQY RKGPESLRGT KPSSSILRLP CYCCAEGCRN NIDHPRSRPL KDFRTLQTHY 180 KRKHGTKPFG CRKCGKPFAV RGDWRTHEKN CGKLWFCICG SDFKHKRSLK DHVRSFGDGH 240 AQYAVELCAE AEEDEEEDLE DEDDNDESRD TNGGGQHHGV GSVYFNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-115	C2H2 family protein