PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0435701
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 393aa    MW: 43123.7 Da    PI: 7.9861
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0435701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.3e-32211266156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  RcHm_v2.0_Chr4g0435701 211 KQRRNWSPELHRRFLHALQQLGGSHTATPKQIRELMKVDGLTNDEVKSHLQKYRLH 266
                             79****************************************************97 PP
2Myb_DNA-binding445.3e-14213264148
                             TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 
                             r +W++e++ ++++a +qlGg    t+k I + m   g+t  ++ks++qky+
  RcHm_v2.0_Chr4g0435701 213 RRNWSPELHRRFLHALQQLGGShtaTPKQIRELMKvDGLTNDEVKSHLQKYR 264
                             679*****************99*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    
MLIESTEEMQ GSKMSLYVKA LEEERQKIQV FQRELPLCLE LVTQAIERCK QELSDNSIEY  60
RHGQSECSEQ TSSEGHVFEE FIPLKRSSCS DSDNDEELEE SDHQQIKIDD KDKSNSGDKK  120
KSDWLRSVQL WNTTPDLPRK EELPRKALVV EVKRNGGAFQ PFQREKGIGK TNGAVAKSPA  180
SAPATSSTAD TVSGGSGGGN SKKEDKEGQR KQRRNWSPEL HRRFLHALQQ LGGSHTATPK  240
QIRELMKVDG LTNDEVKSHL QKYRLHTRRP TPTIHNNNNN NNSNAQAPQF VVVGGIWVPP  300
QDYNAAVAAA NTASGEAARV VAAANGIYAP VASTPSTVTQ VSPSAMHRPR PKKPEPSSHS  360
EERASHSGEG RGHSNSTATS PSSTHTPASP PVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.14e-84G2-like family protein