PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0431621

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 386aa MW: 44395.3 Da PI: 6.1399

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0431621	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.5	6.4e-27	76	158	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem++ ++++k++k+lWe++s+kmre+gf r+p++C++kw+nl k++kk k++ ++ s +++y++++e RcHm_v2.0_Chr4g0431621 76 WVQDETRSLIALRREMDSMFNTSKSNKHLWEQISAKMREKGFDRNPNMCTDKWRNLLKEFKKAKHNHDRG--SGSAKMSYYKEIE 158 ******************************************************************98..44558***998 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MYLSEKPQPV DFHKGDEGGG EDMMIEVVPN EDVSQTHHRN HHQQQQQHHQ LLLLGDSSGS 60 GEDHEAKPQK KRAETWVQDE TRSLIALRRE MDSMFNTSKS NKHLWEQISA KMREKGFDRN 120 PNMCTDKWRN LLKEFKKAKH NHDRGSGSAK MSYYKEIEEI LKQRNKNGQY KSPTPPKVDS 180 FMHFSDKGIE DTNISFAHVE ANGRPTLNLE TGLDHDGHPL AITAADAVAA NGVAPWNWRE 240 TPENGGENQS YGGRVIVVTW GDYTRRIGID GSADAIKEAI KSAFRLRTKR AFWLEDEDQI 300 VRSLDRDMPL GNYTLHLDEG LAVKVCLYDE PENIPVHTEE KIFYTEDDYH EFLTRRGWTC 360 LREFDGYRNI ENMDDLRPGA IYRGVS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MYLSEKPQPV DFHKGDEGGG EDMMIEVVPN EDVSQTHHRN HHQQQQQHHQ LLLLGDSSGS  60
GEDHEAKPQK KRAETWVQDE TRSLIALRRE MDSMFNTSKS NKHLWEQISA KMREKGFDRN  120
PNMCTDKWRN LLKEFKKAKH NHDRGSGSAK MSYYKEIEEI LKQRNKNGQY KSPTPPKVDS  180
FMHFSDKGIE DTNISFAHVE ANGRPTLNLE TGLDHDGHPL AITAADAVAA NGVAPWNWRE  240
TPENGGENQS YGGRVIVVTW GDYTRRIGID GSADAIKEAI KSAFRLRTKR AFWLEDEDQI  300
VRSLDRDMPL GNYTLHLDEG LAVKVCLYDE PENIPVHTEE KIFYTEDDYH EFLTRRGWTC  360
LREFDGYRNI ENMDDLRPGA IYRGVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-173	Trihelix family protein