PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0429961

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CAMTA

Protein Properties

Length: 1002aa MW: 112180 Da PI: 5.6917

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0429961	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	175.8	5.8e-55	14	128	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 +e ++rwlk+ e++ iL+n+ek+++t e++++p sgsl+L+n++++r+fr+DG+ w+kkkdg+tv E+he+LKvg+ve+l+cyYah+ RcHm_v2.0_Chr4g0429961 14 QEaQSRWLKPAEVLFILQNHEKYKVTPEPPQQPVSGSLFLFNKRILRFFRRDGHRWRKKKDGRTVGEAHERLKVGNVETLNCYYAHG 100 5669********************************************************************************* PP CG-1 89 eenptfqrrcywlLeeelekivlvhyle 116 e+np+fqrr+yw+L+ ++e+ivlvhy+e RcHm_v2.0_Chr4g0429961 101 EDNPNFQRRSYWMLDPAYEHIVLVHYRE 128 ************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1002 aa Download sequence
MQSGSGYNIN DLFQEAQSRW LKPAEVLFIL QNHEKYKVTP EPPQQPVSGS LFLFNKRILR 60 FFRRDGHRWR KKKDGRTVGE AHERLKVGNV ETLNCYYAHG EDNPNFQRRS YWMLDPAYEH 120 IVLVHYREIS EVKPGTGSNI QSPVSSSTHS QSPISNTTQH PGSVSMISEL YEPYMSPGSV 180 EVSSDLVIKK NGRESAENLY RTGESDSSSK ADVSQALRRL EEQLSLNDDS FNEFVDDNPD 240 GSDIPEYPSD QFTAFHGQEH IVHDQFYSGH SLMQGNADNS SDILDYHNDI VNQDQFTPFH 300 GPEHIVNDQF YSGRAQMQSN VDLSGKHHQL IGHEFADGNK ESASWKEVLN SSKTSSVVEP 360 QETGLYTLDR SEKLSSSLTG PNGVFEYPSL SRPQEVDIFK LTFSSAIETH SDYFTSFFEQ 420 GQMGNLESDI SLTVAQTQKF TIREISPEWG DANEPTKVIV IGSFLCDPSE SAWTCMFGNV 480 EVPAQIIQEG VIRCEAPPHL PGKVTLCITS GNRESCSEVR EFEYRVKSSR STPNNSPPKE 540 SSRSAEELLL LVRFAQILLS DSSVQKSDTV ESEFVRKSKA DDDTWGSIIE ALLVGSGSSS 600 STIYWLLEEF LKDKLEQWLS SRSQGLDQTD CSLSRKEQGM IHMVAGLGFE WAINPILNLG 660 VNINFRDING WTALHWAARF GREKMVAVLV ASGASAGAVT DPSSQDPIGK TPASIAAIHG 720 HKGLAGYLSE VALTSHLSSL TLEESEISRS CAEIEAEITV NSISKSSLET YEDQGPLKNT 780 LAAVRNAAQA AARIQSAFRA HSFRRRQQKE AGVTIDDYGI SSDDILGLSA MSRLNFRNPR 840 DYNSAALSIQ KKYRGWKGRK DFLALRKKVV KIQAHVRGYQ VRKHYRVICW AVGILDKVVL 900 RWRRKGVGLR GFRNEAESTE SSEDEDILKV FRKQKVDGAI DEAVSRVLSM VESPEAREQY 960 QRMLERYHQA KAELGSTSGE AGAPISLEDF VKMEDIDMYQ FQ

Sequence ? help Back to Top

Protein Sequence Length: 1002 aa Download sequence

MQSGSGYNIN DLFQEAQSRW LKPAEVLFIL QNHEKYKVTP EPPQQPVSGS LFLFNKRILR  60
FFRRDGHRWR KKKDGRTVGE AHERLKVGNV ETLNCYYAHG EDNPNFQRRS YWMLDPAYEH  120
IVLVHYREIS EVKPGTGSNI QSPVSSSTHS QSPISNTTQH PGSVSMISEL YEPYMSPGSV  180
EVSSDLVIKK NGRESAENLY RTGESDSSSK ADVSQALRRL EEQLSLNDDS FNEFVDDNPD  240
GSDIPEYPSD QFTAFHGQEH IVHDQFYSGH SLMQGNADNS SDILDYHNDI VNQDQFTPFH  300
GPEHIVNDQF YSGRAQMQSN VDLSGKHHQL IGHEFADGNK ESASWKEVLN SSKTSSVVEP  360
QETGLYTLDR SEKLSSSLTG PNGVFEYPSL SRPQEVDIFK LTFSSAIETH SDYFTSFFEQ  420
GQMGNLESDI SLTVAQTQKF TIREISPEWG DANEPTKVIV IGSFLCDPSE SAWTCMFGNV  480
EVPAQIIQEG VIRCEAPPHL PGKVTLCITS GNRESCSEVR EFEYRVKSSR STPNNSPPKE  540
SSRSAEELLL LVRFAQILLS DSSVQKSDTV ESEFVRKSKA DDDTWGSIIE ALLVGSGSSS  600
STIYWLLEEF LKDKLEQWLS SRSQGLDQTD CSLSRKEQGM IHMVAGLGFE WAINPILNLG  660
VNINFRDING WTALHWAARF GREKMVAVLV ASGASAGAVT DPSSQDPIGK TPASIAAIHG  720
HKGLAGYLSE VALTSHLSSL TLEESEISRS CAEIEAEITV NSISKSSLET YEDQGPLKNT  780
LAAVRNAAQA AARIQSAFRA HSFRRRQQKE AGVTIDDYGI SSDDILGLSA MSRLNFRNPR  840
DYNSAALSIQ KKYRGWKGRK DFLALRKKVV KIQAHVRGYQ VRKHYRVICW AVGILDKVVL  900
RWRRKGVGLR GFRNEAESTE SSEDEDILKV FRKQKVDGAI DEAVSRVLSM VESPEAREQY  960
QRMLERYHQA KAELGSTSGE AGAPISLEDF VKMEDIDMYQ FQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein