PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0429911

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 298aa MW: 32853 Da PI: 8.9405

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0429911	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.6	2.7e-41	36	112	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls ++eyh+rhkvCe hsk+p+v+++g+e+rfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q RcHm_v2.0_Chr4g0429911 36 CLVDGCNSDLSMCREYHQRHKVCELHSKTPKVTIQGQEKRFCQQCSRFHSLEEFDEGKRSCRRRLAGHNKRRRKPQL 112 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MNNGSKGKLK GHGVSMMNTS LKRGRRANAV IQVASCLVDG CNSDLSMCRE YHQRHKVCEL 60 HSKTPKVTIQ GQEKRFCQQC SRFHSLEEFD EGKRSCRRRL AGHNKRRRKP QLEPMPTSLG 120 AFLSDYQGAT SSAFSTPQLY PTNAVMNSAW EDFPTHSHSQ LSVSRRNSFS ESLPCYSHRV 180 GIGFMHSEAA SSVCQPLLGT NFALGNYGNN HKIFSNEFFS GNVESSCARS LLSLTPAVPE 240 ETGLSLIGQT SSICSAQSFV PRLHHYNDLG MQGGAVVSNL VTDGSNNSNL LCIQQMFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	110	KRSCRRRLAGHNKRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	9e-48	SBP family protein