PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0428941

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 353aa MW: 39276 Da PI: 5.8804

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0428941	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.5	3.2e-27	51	145	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 rWt+qe+l+Li+++r e+r + g+ +++p+W++vs++++++g++r+p+qC+++w+nl++++kki+e+e +r++e++s RcHm_v2.0_Chr4g0428941 51 RWTRQEILVLIKGKRAAESRGGGGRtarsefgsgQAEPKWAAVSSYCKKHGVNRGPVQCRKRWSNLAGDFKKIREWEAQRKDETESF 137 8*************999999665555667777***********************************************999 PP trihelix 79 cpyfdqle 86 +++ ++l+ RcHm_v2.0_Chr4g0428941 138 WVMRNDLR 145 9999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MVMALEFEQQ HQQLSLTTNP VDGDTNGVDA AAGRASAEAG DDSSKAPRLP RWTRQEILVL 60 IKGKRAAESR GGGGRTARSE FGSGQAEPKW AAVSSYCKKH GVNRGPVQCR KRWSNLAGDF 120 KKIREWEAQR KDETESFWVM RNDLRRERKL PGFFDKEVYD IMEAVSGAGA PVTLALAPPP 180 LMVSEAENNL KEGLTDEVEK LFDSRQGPTD DGLFSDYEQE ESGRSPDKEV RLKSPTAIPA 240 PLPISEKLFK PIQASQGQGA AGQKQPPSIP EMGSTSQDRK RKRFAIDGEE ETFSLQNQLI 300 EVMERNGKML ADYFEAQNSH SQLDREQRKE HSDSLIAVLN KLADAFMRIA DKL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MVMALEFEQQ HQQLSLTTNP VDGDTNGVDA AAGRASAEAG DDSSKAPRLP RWTRQEILVL  60
IKGKRAAESR GGGGRTARSE FGSGQAEPKW AAVSSYCKKH GVNRGPVQCR KRWSNLAGDF  120
KKIREWEAQR KDETESFWVM RNDLRRERKL PGFFDKEVYD IMEAVSGAGA PVTLALAPPP  180
LMVSEAENNL KEGLTDEVEK LFDSRQGPTD DGLFSDYEQE ESGRSPDKEV RLKSPTAIPA  240
PLPISEKLFK PIQASQGQGA AGQKQPPSIP EMGSTSQDRK RKRFAIDGEE ETFSLQNQLI  300
EVMERNGKML ADYFEAQNSH SQLDREQRKE HSDSLIAVLN KLADAFMRIA DKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	7e-95	Trihelix family protein