PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0427351

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 1027aa MW: 113661 Da PI: 7.4187

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0427351	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.6	2.4e-40	147	224	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska++++v + qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ RcHm_v2.0_Chr4g0427351 147 VCQVEDCKADLSHAKDYHRRHKVCDMHSKATTAMVGNNLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 224 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence
MEAFGGKPRN LYGPVVPDLK AVGKKSLEWD LNDWKWDGHV FTATPLNSVP SDCRSRQLFP 60 TGPETPSNTG WSNSSSSGSD DISPGNEKGK RELEKRRRAA VVENEEINDE AGSLNLKLGG 120 QVYPILEEDG KTGKKTKIVG TTSNRAVCQV EDCKADLSHA KDYHRRHKVC DMHSKATTAM 180 VGNNLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDTVVNG GSMNDERGSS 240 YILITLLRIL SNLHSNSSDQ TKDQDLLSHL LKNIANNIGT VDGRSISALL QGSQGLLNGG 300 SSVQTAQKVP DIGFNGKEPG RPSVSTSKMD DCINLNGHLR PTGQCPTGPA SDKLLNRISS 360 VGGDLGSQAL SGVQATKSLS SRDSLPSKSV APEYGRIQLN EIDLNNTYDD SQEYLENLGN 420 SHVPVNPGTE FHGGPFWIQR DSQKSSPPQT SGNSDSAATR SPSSSSGEAQ SRTDRIVFKL 480 FGKDPSDLPF GLRSQVLGWL SSTPTDIESY IRPGCIILTI YLRLEKSTWE ELCCHLGSSL 540 AKLLDASNDP FWRTGWVYTR VQHFVAFVYN GQVVLDTPLP LRSHKTCRIS CIKPIAVSLS 600 ERAEFVVKGF NLSSSTTRLL CALEGKYLAQ EACHDLMEAT DTTSEHDGLQ CLRFSCSIPD 660 ATGRGFIEVE DHGLSSSFFP FIVAEQEVCS EICMLEDAIE AANDMQRDPE IMEAKNQAMD 720 FIHELGWLLH KSQVKSRLGH TDPKLDLFPF QRFRLLMEFS MEHDWCAVVN KLLGILYEGT 780 VDAGEHLSIE LALLDMGLLH RAVQRNCKPM VEFLLRFVPD KGLDKAELEE KQQVDRNSNR 840 FLFRPDVVGP MGLTPLHVAA STDGCEYVLD ALTNDPGKVG IKAWKNARDS LGLTPYDYAC 900 LRGRYTYIHI VQRKISKTES GHVVLDIPGT ILDKNTKQKQ IDGHKSSKVA SFNTEKIAMT 960 AIHGDCKLCN QKLAYGSTRS LVYRPAMLSM VTVAAVCVCV ALLFKSSPEV VFVFRPFRWE 1020 LLKYGPS

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence

MEAFGGKPRN LYGPVVPDLK AVGKKSLEWD LNDWKWDGHV FTATPLNSVP SDCRSRQLFP  60
TGPETPSNTG WSNSSSSGSD DISPGNEKGK RELEKRRRAA VVENEEINDE AGSLNLKLGG  120
QVYPILEEDG KTGKKTKIVG TTSNRAVCQV EDCKADLSHA KDYHRRHKVC DMHSKATTAM  180
VGNNLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDTVVNG GSMNDERGSS  240
YILITLLRIL SNLHSNSSDQ TKDQDLLSHL LKNIANNIGT VDGRSISALL QGSQGLLNGG  300
SSVQTAQKVP DIGFNGKEPG RPSVSTSKMD DCINLNGHLR PTGQCPTGPA SDKLLNRISS  360
VGGDLGSQAL SGVQATKSLS SRDSLPSKSV APEYGRIQLN EIDLNNTYDD SQEYLENLGN  420
SHVPVNPGTE FHGGPFWIQR DSQKSSPPQT SGNSDSAATR SPSSSSGEAQ SRTDRIVFKL  480
FGKDPSDLPF GLRSQVLGWL SSTPTDIESY IRPGCIILTI YLRLEKSTWE ELCCHLGSSL  540
AKLLDASNDP FWRTGWVYTR VQHFVAFVYN GQVVLDTPLP LRSHKTCRIS CIKPIAVSLS  600
ERAEFVVKGF NLSSSTTRLL CALEGKYLAQ EACHDLMEAT DTTSEHDGLQ CLRFSCSIPD  660
ATGRGFIEVE DHGLSSSFFP FIVAEQEVCS EICMLEDAIE AANDMQRDPE IMEAKNQAMD  720
FIHELGWLLH KSQVKSRLGH TDPKLDLFPF QRFRLLMEFS MEHDWCAVVN KLLGILYEGT  780
VDAGEHLSIE LALLDMGLLH RAVQRNCKPM VEFLLRFVPD KGLDKAELEE KQQVDRNSNR  840
FLFRPDVVGP MGLTPLHVAA STDGCEYVLD ALTNDPGKVG IKAWKNARDS LGLTPYDYAC  900
LRGRYTYIHI VQRKISKTES GHVVLDIPGT ILDKNTKQKQ IDGHKSSKVA SFNTEKIAMT  960
AIHGDCKLCN QKLAYGSTRS LVYRPAMLSM VTVAAVCVCV ALLFKSSPEV VFVFRPFRWE  1020
LLKYGPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein