PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0427341

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 1017aa MW: 112814 Da PI: 6.6217

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0427341	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.9	1.9e-40	149	225	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C+adls+ak+yhrrhkvC +hska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+ RcHm_v2.0_Chr4g0427341 149 VCQVEDCRADLSNAKDYHRRHKVCVMHSKASEALVGNAMQRFCQQCSRFHVLKEFDEGKRSCRRRLAGHNKRRRKTL 225 6*************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 1017 aa Download sequence
MEGFGAKNRG FYGPVATDLR GVGKRSLEWD LNDWKWDGDL FAASPLNSVL SDCRSRQLFP 60 AGPGTPSIAG FSNSCSSGSD DISPGNEKGK REVEKRRRGV VMENEELHDE ARSLNLNLGG 120 QAYPIVEGEV NTGKKTKIVG NGTTSNRSVC QVEDCRADLS NAKDYHRRHK VCVMHSKASE 180 ALVGNAMQRF CQQCSRFHVL KEFDEGKRSC RRRLAGHNKR RRKTLPDTAV NAGSLNDEIG 240 SSYLLISLLR ILSNMHSNSS DQTKDQDLLS HLLKSIANLA GTVDGRNISA LLQASQGLTN 300 TGSSIKTAQQ VQDTVSNIFE PSRPSVSASS MDDCVIIEEP LRPIGQRPIL PASDMQKRRS 360 SVDGDLGSQI TSGLQANKPL PSRESAPTNS VTPIQLLEID LNSPYDDSQD YLETLGTSHV 420 TINPGIQQDS HKSSPPQTSG NSDSTFTQSP SSSSGESQNR TDRIVFKLFG KDPNELPFVL 480 RSQIIDWLSH SPTEIESYIR PGCIILTIYL RLEKSTWEEL CCHLGSSLQR LLDAANDPFW 540 RTGWVYTRMQ HFVALMYNGQ VVLDTTLPLK SQKSCRISSI KPIAVSLSER AQFVVKGFNL 600 PHPTTRLLCA LEGKYLAQEA CDDVMDGADT TVEHDELRCI RFSCSIPNVT GRGFIEVEDL 660 GLSSSFFPFI VAEQEVCSEI CMLEDAIEAA ETVDDIQADP EILEAKNQAM DFIHELGWLL 720 HRSHVKFRLG HLDPNLDLFP FRRFKLLMEF SVDHDWCAVV KKLLKLLFDS TVDAGEHPSV 780 QLALLDMALL HRAVRRNCRP MVELLLRFVP DKGLESEQKK YVEGEDNSFL FKPDGVGPLG 840 LTPLHVAASI DGCEHVLDAL TDDPGKVGIE AWKNARDSTG MTPYDYASMQ GRYSYINLVQ 900 RKISKKLESG HVVLDIPGTV LESNSKQKQS DGHRSSKVAS LDTEKFEINA LIRRDCKLCS 960 QKLAYGSTRS LVYRPAMLSM VAIAAVCVCV ALLFKSTPEV VFIFHPFRWE HLKFGSS

Sequence ? help Back to Top

Protein Sequence Length: 1017 aa Download sequence

MEGFGAKNRG FYGPVATDLR GVGKRSLEWD LNDWKWDGDL FAASPLNSVL SDCRSRQLFP  60
AGPGTPSIAG FSNSCSSGSD DISPGNEKGK REVEKRRRGV VMENEELHDE ARSLNLNLGG  120
QAYPIVEGEV NTGKKTKIVG NGTTSNRSVC QVEDCRADLS NAKDYHRRHK VCVMHSKASE  180
ALVGNAMQRF CQQCSRFHVL KEFDEGKRSC RRRLAGHNKR RRKTLPDTAV NAGSLNDEIG  240
SSYLLISLLR ILSNMHSNSS DQTKDQDLLS HLLKSIANLA GTVDGRNISA LLQASQGLTN  300
TGSSIKTAQQ VQDTVSNIFE PSRPSVSASS MDDCVIIEEP LRPIGQRPIL PASDMQKRRS  360
SVDGDLGSQI TSGLQANKPL PSRESAPTNS VTPIQLLEID LNSPYDDSQD YLETLGTSHV  420
TINPGIQQDS HKSSPPQTSG NSDSTFTQSP SSSSGESQNR TDRIVFKLFG KDPNELPFVL  480
RSQIIDWLSH SPTEIESYIR PGCIILTIYL RLEKSTWEEL CCHLGSSLQR LLDAANDPFW  540
RTGWVYTRMQ HFVALMYNGQ VVLDTTLPLK SQKSCRISSI KPIAVSLSER AQFVVKGFNL  600
PHPTTRLLCA LEGKYLAQEA CDDVMDGADT TVEHDELRCI RFSCSIPNVT GRGFIEVEDL  660
GLSSSFFPFI VAEQEVCSEI CMLEDAIEAA ETVDDIQADP EILEAKNQAM DFIHELGWLL  720
HRSHVKFRLG HLDPNLDLFP FRRFKLLMEF SVDHDWCAVV KKLLKLLFDS TVDAGEHPSV  780
QLALLDMALL HRAVRRNCRP MVELLLRFVP DKGLESEQKK YVEGEDNSFL FKPDGVGPLG  840
LTPLHVAASI DGCEHVLDAL TDDPGKVGIE AWKNARDSTG MTPYDYASMQ GRYSYINLVQ  900
RKISKKLESG HVVLDIPGTV LESNSKQKQS DGHRSSKVAS LDTEKFEINA LIRRDCKLCS  960
QKLAYGSTRS LVYRPAMLSM VAIAAVCVCV ALLFKSTPEV VFIFHPFRWE HLKFGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein