PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0425801

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 388aa MW: 42399.3 Da PI: 6.7057

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0425801	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.1	4.4e-34	208	266	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers++dp++v++tYeg+H+h+ RcHm_v2.0_Chr4g0425801 208 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHP 266 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MDGRQELRNN TTTTNRTTLP PSSSSSAPMA NSALFSDHEI PMIPNSTFSS LSSIFDSEPE 60 RGYLGFMELL GNTDFAPVVD FGTQTTPSDS LVTMMMPPQQ QQQQTQALPS PVSSTVPESG 120 TNSEALNSGA NTAPTTPNSS SISSSSNEAH AANNNNEEQT TTKAGDEEED ADQDPDKTQK 180 QLKPKKKNQK RQREPRFAFM TKSEVDNLDD GYRWRKYGQK AVKNSPYPRS YYRCTTAGCG 240 VKKRVERSSD DPSIVVTTYE GQHTHPSPIT PRGSMGMAPL PSELSGHLFT GAGSGYGVPH 300 HYQHQQQQQQ HLHSYIYNSS PSLNITTTTS SAPSYGFNPA SCHGLFQQRY NNTGGGHSSN 360 LAASNLLRDH GLLQDMLPSQ IRKETKEG

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MDGRQELRNN TTTTNRTTLP PSSSSSAPMA NSALFSDHEI PMIPNSTFSS LSSIFDSEPE  60
RGYLGFMELL GNTDFAPVVD FGTQTTPSDS LVTMMMPPQQ QQQQTQALPS PVSSTVPESG  120
TNSEALNSGA NTAPTTPNSS SISSSSNEAH AANNNNEEQT TTKAGDEEED ADQDPDKTQK  180
QLKPKKKNQK RQREPRFAFM TKSEVDNLDD GYRWRKYGQK AVKNSPYPRS YYRCTTAGCG  240
VKKRVERSSD DPSIVVTTYE GQHTHPSPIT PRGSMGMAPL PSELSGHLFT GAGSGYGVPH  300
HYQHQQQQQQ HLHSYIYNSS PSLNITTTTS SAPSYGFNPA SCHGLFQQRY NNTGGGHSSN  360
LAASNLLRDH GLLQDMLPSQ IRKETKEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	7e-55	WRKY family protein