PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0425711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 275aa MW: 31359 Da PI: 9.318 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.1 | 1.6e-18 | 24 | 116 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ffk+ +++ l++p f +++ +++ + tl+l+++s sW+vk+ +++ ++l++GW+eF ++n L + +f+vF++d RcHm_v2.0_Chr4g0425711 24 FFKII--RPGFNTEHLRIPPAFRKHIlhESI--KRATLKLKNSSDTSWTVKV--IITGRDIYLKDGWQEFLRDNSLGDSEFLVFRYD 104 66666..55666777*******877765444..6679***************..777777*************************** PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 +++ f + +f+k RcHm_v2.0_Chr4g0425711 105 KNMHF--IINIFDK 116 99999..9999997 PP | |||||||
2 | B3 | 46 | 9.6e-15 | 195 | 274 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 s+++ +p +f +e+ +++ + +l l + +g +++v+l + ++++l++GW++F ++n+L+e D+++F+l++ e ++vv++fr RcHm_v2.0_Chr4g0425711 195 SKMVAIPTHFYREIFSSS-KYDELFLVTAKG-KFTVTL--LPCTDTVMLSGGWSSFRNDNQLQEDDICIFELVK--ENTMVVHIFR 274 46689*********5443.334788888666.699999..*******************************986..6678****98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence |
MARRACTSLP FHDGSVEEEK GPTFFKIIRP GFNTEHLRIP PAFRKHILHE SIKRATLKLK 60 NSSDTSWTVK VIITGRDIYL KDGWQEFLRD NSLGDSEFLV FRYDKNMHFI INIFDKNCVE 120 RVNITDLRTH KAPTFPDNPK GPLARPPTAA GDHRYDLAVE AAHVLKSKGE HLPSYAAAAA 180 FKSKFPYFAK VLAGSKMVAI PTHFYREIFS SSKYDELFLV TAKGKFTVTL LPCTDTVMLS 240 GGWSSFRNDN QLQEDDICIF ELVKENTMVV HIFRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 2e-16 | B3 family protein |