PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0424431

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CAMTA

Protein Properties

Length: 866aa MW: 98178.1 Da PI: 7.8514

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0424431	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.4	9.8e-52	27	143	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 +e k rwl+++ei+aiL n++ ++++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+ RcHm_v2.0_Chr4g0424431 27 EEaKGRWLRPNEIHAILYNYKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHG 113 45499******************************************************************************** PP CG-1 89 eenptfqrrcywlLeeelekivlvhylevk 118 e+ ptf rrcywlL+++le+ivlvhy+e++ RcHm_v2.0_Chr4g0424431 114 EDSPTFVRRCYWLLDKSLEHIVLVHYRETQ 143 *************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence
MDKPLVGSEI HGFHTMQGYL DVDTIMEEAK GRWLRPNEIH AILYNYKYFT IHVKPVNLPK 60 SGTIVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEERIHVYY AHGEDSPTFV 120 RRCYWLLDKS LEHIVLVHYR ETQELQGSPA TPVNSNSNSN SNSSSISDPS APWRLSEELD 180 SGANNSYYGG ANELLEPGIG LNVNNHEQRL HDINTLEWDE LLVTYDSKGD KVSGFDQQNQ 240 LVGSGAISGG PCDSSDILGN DGLRSQDSFG RWINQIMTNS PGSVDDSVLE SSFPPSQSSF 300 ASPAMEHIQS SVPEQIFIIT DVSPAWAFSN EKTKILITGF FHQEVLDLAK SNLLCICGDV 360 CIPAEIVQVG VYRCFIPPHV PRFVNLFISL DGQKPISQIQ NFEYRSPVMS NLVVPSGENK 420 LEEFQLQMRL AHLLFSSSKS LNIASSKVSP HTLKEAKKFS HRTSHISNSW QYLIKSIEVN 480 STPLPLAKDS LFELILKNRL KDWLLEKVLD SSKTKECDGH GQGVIHLCAI LDYTWAVRLF 540 SWSGLSLDFR DRRGWTALHW AAYHGREKMV AVLLSAGAKP NLVTDPTSEN PGGCTAADLA 600 FMKGYEGLAA YLSEKALLKQ FEDMSIAGNV SGSLQTNTNC YQHSENLSEE DLYLNDTLTA 660 YRTAADAAAR IQAAFRENAL KLKAKAVESY SPEDEARSII AALKIQHAFR HYDARKKMAA 720 AARIQYRFRT WKIRQEFLNM RRQAVKIQAA FRAFQTRKQY RKILWGVGVL EKAVLRWRLK 780 RKGLRGLQVD PIEADGDDKQ ESDTEEDFYR NSRKQAEERV ERSIVRVQAM FRSKKAQQEY 840 SRMKLAHTEA KLEYEDIFDP DNNMRG

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence

MDKPLVGSEI HGFHTMQGYL DVDTIMEEAK GRWLRPNEIH AILYNYKYFT IHVKPVNLPK  60
SGTIVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEERIHVYY AHGEDSPTFV  120
RRCYWLLDKS LEHIVLVHYR ETQELQGSPA TPVNSNSNSN SNSSSISDPS APWRLSEELD  180
SGANNSYYGG ANELLEPGIG LNVNNHEQRL HDINTLEWDE LLVTYDSKGD KVSGFDQQNQ  240
LVGSGAISGG PCDSSDILGN DGLRSQDSFG RWINQIMTNS PGSVDDSVLE SSFPPSQSSF  300
ASPAMEHIQS SVPEQIFIIT DVSPAWAFSN EKTKILITGF FHQEVLDLAK SNLLCICGDV  360
CIPAEIVQVG VYRCFIPPHV PRFVNLFISL DGQKPISQIQ NFEYRSPVMS NLVVPSGENK  420
LEEFQLQMRL AHLLFSSSKS LNIASSKVSP HTLKEAKKFS HRTSHISNSW QYLIKSIEVN  480
STPLPLAKDS LFELILKNRL KDWLLEKVLD SSKTKECDGH GQGVIHLCAI LDYTWAVRLF  540
SWSGLSLDFR DRRGWTALHW AAYHGREKMV AVLLSAGAKP NLVTDPTSEN PGGCTAADLA  600
FMKGYEGLAA YLSEKALLKQ FEDMSIAGNV SGSLQTNTNC YQHSENLSEE DLYLNDTLTA  660
YRTAADAAAR IQAAFRENAL KLKAKAVESY SPEDEARSII AALKIQHAFR HYDARKKMAA  720
AARIQYRFRT WKIRQEFLNM RRQAVKIQAA FRAFQTRKQY RKILWGVGVL EKAVLRWRLK  780
RKGLRGLQVD PIEADGDDKQ ESDTEEDFYR NSRKQAEERV ERSIVRVQAM FRSKKAQQEY  840
SRMKLAHTEA KLEYEDIFDP DNNMRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	CAMTA family protein