PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0421711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YB | ||||||||
Protein Properties | Length: 164aa MW: 18609.9 Da PI: 6.1472 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 163.3 | 3.5e-51 | 24 | 117 | 3 | 96 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 + d++lPianv+rimk++lP nakisk+aket+qecvsefisfvt+eas+kcq+ekrkt+ngdd++walatlGf++y+ pl+ yl++ RcHm_v2.0_Chr4g0421711 24 QPDQLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASHKCQKEKRKTVNGDDICWALATLGFDNYAGPLRRYLHR 110 5699*********************************************************************************** PP NF-YB 90 yrelege 96 yr+ eg+ RcHm_v2.0_Chr4g0421711 111 YRDQEGA 117 ***9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence |
MVDNIGGSAP NICDHGQGDI KTEQPDQLLP IANVGRIMKQ ILPPNAKISK EAKETMQECV 60 SEFISFVTGE ASHKCQKEKR KTVNGDDICW ALATLGFDNY AGPLRRYLHR YRDQEGAEHI 120 ANDNNNNEDK LKLLVNNILS TDQEQRIIMI MNQYDHPHHD IQKT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 7e-54 | NF-YB family protein |