PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0420491

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 822aa MW: 91282.8 Da PI: 7.118

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0420491	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	117	9.5e-37	145	221	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+ C ad++e+k yhrrh+vC ++++a++v++ g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k RcHm_v2.0_Chr4g0420491 145 RCQVPTCGADIKELKGYHRRHRVCLACANATTVVLGGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKP 221 6***********************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence
MQKSPPLSPT QSQRQRLDQP RVSHIPQPPM AAGDTSSVWD WGDLLDFTVD DDLAISWASA 60 DPPNPPESHH LPPPDDPPEN PNPSAAPAAR IRKRDPRLAC SNFLAGHVPC ACPEVDEKMM 120 ELEEEEAGHG KKRVRTVRAP PGTARCQVPT CGADIKELKG YHRRHRVCLA CANATTVVLG 180 GETKRYCQQC GKFHVLSDFD EGKRSCRRKL ERHNNRRRRK PSDSKAGKES QREVQTEGGN 240 HDGEAGEDSL QLSSQINEKE DLVESEGGGI STLFSMPNSQ NVGSDGVASA LTSGDTQMDG 300 GKHDSNHSLS PPQCDNKSVY SSMCPTGRIS FKLYDWNPAE FPRRLRHQIF QWLASMPVEL 360 EGYIRPGCII LTVFIAMPKF MWMKLLDDPA SYLHNFVIVP GRMLSGRGNM LVYLNDMIFR 420 VVKDGTSVIK AKVEVRAPRL HYIHPTCFEA GKPMEFFVCG SNLLQPKLRF LVSFSGKYLA 480 DNYDLESSHT QIEGDSTAAN IDHQLYKIHV PHTEATSFGP AFIEVENESG LSNFLPVLIG 540 NKEICAEMES IQKRLEESLF VRGSSDVSSS GSLLTSCEAS SLRHRAFSEV ILDIAWLLRK 600 PSSENVQQIM TSSQAQRFNN LLNLLIFFKS TTILEKVLEN LNTLMDNVEI NNPDSGSIDA 660 DMRLLQKYMD CARDILSQKL QSSGVSVVEP GSLVQKQDLI SQSLSRFQSK QHFLIHTQDT 720 EIIVDGKMDA MLGSTSNERS ETLPLLNKKA ATKANLIKQA NCGISSGELL SSRSRRTFLG 780 FRSTLYVISA TAMCLGICAV VFHPHKVGEL AVTIRRCLFD KI

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence

MQKSPPLSPT QSQRQRLDQP RVSHIPQPPM AAGDTSSVWD WGDLLDFTVD DDLAISWASA  60
DPPNPPESHH LPPPDDPPEN PNPSAAPAAR IRKRDPRLAC SNFLAGHVPC ACPEVDEKMM  120
ELEEEEAGHG KKRVRTVRAP PGTARCQVPT CGADIKELKG YHRRHRVCLA CANATTVVLG  180
GETKRYCQQC GKFHVLSDFD EGKRSCRRKL ERHNNRRRRK PSDSKAGKES QREVQTEGGN  240
HDGEAGEDSL QLSSQINEKE DLVESEGGGI STLFSMPNSQ NVGSDGVASA LTSGDTQMDG  300
GKHDSNHSLS PPQCDNKSVY SSMCPTGRIS FKLYDWNPAE FPRRLRHQIF QWLASMPVEL  360
EGYIRPGCII LTVFIAMPKF MWMKLLDDPA SYLHNFVIVP GRMLSGRGNM LVYLNDMIFR  420
VVKDGTSVIK AKVEVRAPRL HYIHPTCFEA GKPMEFFVCG SNLLQPKLRF LVSFSGKYLA  480
DNYDLESSHT QIEGDSTAAN IDHQLYKIHV PHTEATSFGP AFIEVENESG LSNFLPVLIG  540
NKEICAEMES IQKRLEESLF VRGSSDVSSS GSLLTSCEAS SLRHRAFSEV ILDIAWLLRK  600
PSSENVQQIM TSSQAQRFNN LLNLLIFFKS TTILEKVLEN LNTLMDNVEI NNPDSGSIDA  660
DMRLLQKYMD CARDILSQKL QSSGVSVVEP GSLVQKQDLI SQSLSRFQSK QHFLIHTQDT  720
EIIVDGKMDA MLGSTSNERS ETLPLLNKKA ATKANLIKQA NCGISSGELL SSRSRRTFLG  780
FRSTLYVISA TAMCLGICAV VFHPHKVGEL AVTIRRCLFD KI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	219	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein