PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0412531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 1302aa    MW: 139299 Da    PI: 4.2755
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0412531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000681840123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++Cg +F++++   rH r H
  RcHm_v2.0_Chr4g0412531 18 HVCHKCGWPFPNPHPSARHRRAH 40
                            79******************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1302 aa     Download sequence    
MDHQDLRRAH SSGHESHHVC HKCGWPFPNP HPSARHRRAH KKICGTVEGY KVAGAEGSAQ  60
LSVSDDEQHS DEDPKTPGPK VVERSVYERG SGGIGQGSIK SDDGVFSDAV QEFSDSGSAA  120
WTGEGLEDAP GSARNVERGA KSDLNAIPFH NDGGTTEDKS NPNKYEMVTD ASEDMKKTDV  180
TDSMIESCLT SVDQEAEVTG ITATNLDRNI SSGTTSISDG RTEESNVLLG DSNGLHPIKY  240
EMVTDASDAI KKTGATDSMI ESCLTSVDQD AEVTGITVTN LVRNMILPNK VAGETVEGGS  300
KLEGSNEMTS EYVRDDELVP SEKEHTDGFD MHIPQIDVPP EVESVAHVNT FVDTAEKKVD  360
NTDGIQYLSP DKVIESRNGK EEENANAHVH VLSVPDDIHV VDDPVLMLED FRNHKGKQLD  420
QVTFLDSLEQ FDDKENDVKQ PVFNESLNIF QSSHLSGGSV VSSDMHDLEA SLEPDLGSSK  480
PMIKSVPVED EANMSETEIK MFKNQSSDEI GAHADAVMPQ IAKTYMVNFA ASDAGIGQTT  540
HSVGPENNER DGNCDGTGES GDHSRKVTAE ENLVSNPIAT VQSAEGQESY EKSNESGQES  600
HNLMRNCDGS GESGDHSRKV TAEENLVANP IATVQSAEGQ VSYEKSNESL QVNLAAGDAG  660
IDETTHSVGP VDNEKDGNCD GSGESGDYSR KGPAEVNLVA TPIGTVQSAD HYENQIYPAA  720
NLHKVDDASE YEKGVIEKCN KIGDAGYNEN AETSNLCGDD KSKGVAENFS TDPASNLESV  780
SCLSELQVNP VTNLHESGDA AGDCEKDKTE KCDVTGYDGD HERAEKYASS GEEISKRSTE  840
KTFVEDSTTN LESIITLSDS QVHPAGKLPD VDGSADRDEG EIEKFVISGN ESMEGSVEEN  900
ILVKSELTPE SSANLTGSKA IVEDAANGSR MELVETSGRD LDSGSNSSKV AGKILSDAQQ  960
DVLENEIACN DKILKEFDAG VAAGSDHGQN VESFQKSSED HGKKEPGFSA LDTESSVQSF  1020
IASEDSSSQE VHAVASGITS QSLLEEGDNN LVRQQPSSTA IDVDSNSPTD SLEANWGSFS  1080
VLSMQSDAET VPHTHSQSSL GENSDLKKSK VECESQYSGK TDMFEAPSFM TLVEPLGGDD  1140
QKATGSEILT AVQNPEQPKP ASLQTGWFPS MTHVVNESPG RKKNEEIIAK VTNRSTGKQH  1200
TPLKNLLGEA SSESNGKPLN QKESLAPAPA PQKDDKAAMV SGPVTTTVSS ILNPESPTGQ  1260
AAKKETAKEW NSPARYPSDT KSEKRKVKGR SWAQFVCCAS VN