PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0405961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 166aa MW: 18378 Da PI: 8.9316 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.6 | 0.00012 | 58 | 95 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R ++ +++ L++l+ + +K + a++L +A++YI+ L RcHm_v2.0_Chr4g0405961 58 RKEKFGERIVALQQLVSPY-----GKTDTASVLLEAMDYIRFL 95 6666667888999999988.....9****************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence |
MIASSLCNAT SRFSGEEGID VRKMTEHKRS PCSVDQSSVT ALASKRHKTD LSMSTKERKE 60 KFGERIVALQ QLVSPYGKTD TASVLLEAMD YIRFLHEQVK VLSAPYLQST PTAKMQELHP 120 YSLRSRGLCL VPVDCTVGVA QSNGADIWAP IKTTSPKFEN VTSNFH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.3 | 2e-67 | bHLH family protein |