PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0403351

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 363aa MW: 41043.9 Da PI: 6.1025

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0403351	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3.1e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++++G+g +W + ++++g++R++k+c++rw++yl RcHm_v2.0_Chr4g0403351 14 KGPWSPEEDATLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.6	2.6e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ RcHm_v2.0_Chr4g0403351 69 GGFSEEEDNIICNLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC NLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RKQSGANRGS QDLKDASDDA HQALSSSALE RLQLHMQLQN LQNPFSFYNN PALWPKLHPF 180 QEKMIQTVQS MNDQNSANPL MMQQFSVPSH DQTVQGHKVN DHFYEQTTGA LAIQEQYAKL 240 CINPKMDELE NALNGMSSSF ISTSNPVDST IVVAKPDMIE QQVNSSFQAQ LDGINNSVGF 300 TSQQQDDQIV EFDCFKEMNV SKDSLMWWAN DFDNKSASSN SWDSTSVLQS QGMFQDYELG 360 YNL

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDATLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC NLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
RKQSGANRGS QDLKDASDDA HQALSSSALE RLQLHMQLQN LQNPFSFYNN PALWPKLHPF  180
QEKMIQTVQS MNDQNSANPL MMQQFSVPSH DQTVQGHKVN DHFYEQTTGA LAIQEQYAKL  240
CINPKMDELE NALNGMSSSF ISTSNPVDST IVVAKPDMIE QQVNSSFQAQ LDGINNSVGF  300
TSQQQDDQIV EFDCFKEMNV SKDSLMWWAN DFDNKSASSN SWDSTSVLQS QGMFQDYELG  360
YNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	4e-86	MYB family protein