PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0399601

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-PHD

Protein Properties

Length: 699aa MW: 78418.4 Da PI: 9.6433

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0399601	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.4	1.6e-10	473	517	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F +n ps++ + L+k+lgL+ ++V+ WF+N R+ RcHm_v2.0_Chr4g0399601 473 RNAVEKLRQVFSENELPSKAVKDNLSKELGLDPEKVSKWFKNTRY 517 578899*************************************97 PP
2	PHD	39.8	1e-13	232	287	1	51
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ +++ ++++vlCd +C+ +fH+kCl+++l++e++p+g w+C+ C++k RcHm_v2.0_Chr4g0399601 232 FCAKCKLNEAfpDNDIVLCDgTCNAAFHQKCLDPPLDTENIPRGdqGWFCKFCECK 287 699999955455******56*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MRGLGKKSSV QESGKSHYST PLSKLLSSAK FKKGGKVSHV KKVKPKSKTT IASSLLKRRS 60 ADSSRKGTKN NDTSKKLTTR KGLHKACDAD YSNKSSSVKL QNEKFSKDGS DEKGENADGE 120 TRIRKRRRKK KSKKNKVDVD ETARLQRRTR YLLIKIKLEQ NLIDAYSGEG WKGQSREKIK 180 PEKELQRAEN QILKCKLGIR DAIHQLHSLG SVGSIADSVI DPDGSVYHEH IFCAKCKLNE 240 AFPDNDIVLC DGTCNAAFHQ KCLDPPLDTE NIPRGDQGWF CKFCECKMEI LEVVNAHLGT 300 CFSMDSTWQD VFKEEAAFPD GGNLLLNPDE EWPSDESDDD DYNPDRNVNS CSISREGSDE 360 NVSDDELSTD GSVGSDESTD GDIVSGRRQR SSVDYKKLYD EMFGKEGPVL EQVSDDEDWG 420 PGKRKRREKE SDAASTLMTL YESERNPDAV PTEVKSKPTT DTHVRRSCFR IPRNAVEKLR 480 QVFSENELPS KAVKDNLSKE LGLDPEKVSK WFKNTRYLAL KTRKAEGTKN LHTSASEINK 540 ESRYENVTGK AVDLMASDFE DASTETVVHS PRNIKKSFRR KHPKSLSSTQ KKNQQKGSSC 600 LSPAKSNKDG MELSDDVSLK KLLKGRTKEK RANIIAGSGG ESQVAELEME RLCKAKGRLE 660 NMRQKLLKFQ IAKAKKSKKP PPHEQSVIYV PVAELKEKV

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MRGLGKKSSV QESGKSHYST PLSKLLSSAK FKKGGKVSHV KKVKPKSKTT IASSLLKRRS  60
ADSSRKGTKN NDTSKKLTTR KGLHKACDAD YSNKSSSVKL QNEKFSKDGS DEKGENADGE  120
TRIRKRRRKK KSKKNKVDVD ETARLQRRTR YLLIKIKLEQ NLIDAYSGEG WKGQSREKIK  180
PEKELQRAEN QILKCKLGIR DAIHQLHSLG SVGSIADSVI DPDGSVYHEH IFCAKCKLNE  240
AFPDNDIVLC DGTCNAAFHQ KCLDPPLDTE NIPRGDQGWF CKFCECKMEI LEVVNAHLGT  300
CFSMDSTWQD VFKEEAAFPD GGNLLLNPDE EWPSDESDDD DYNPDRNVNS CSISREGSDE  360
NVSDDELSTD GSVGSDESTD GDIVSGRRQR SSVDYKKLYD EMFGKEGPVL EQVSDDEDWG  420
PGKRKRREKE SDAASTLMTL YESERNPDAV PTEVKSKPTT DTHVRRSCFR IPRNAVEKLR  480
QVFSENELPS KAVKDNLSKE LGLDPEKVSK WFKNTRYLAL KTRKAEGTKN LHTSASEINK  540
ESRYENVTGK AVDLMASDFE DASTETVVHS PRNIKKSFRR KHPKSLSSTQ KKNQQKGSSC  600
LSPAKSNKDG MELSDDVSLK KLLKGRTKEK RANIIAGSGG ESQVAELEME RLCKAKGRLE  660
NMRQKLLKFQ IAKAKKSKKP PPHEQSVIYV PVAELKEKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	128	RKRRR
2	124	130	RKRRRKK
3	124	131	RKRRRKKK
4	125	131	RKRRRKK
5	126	134	RRRKKKSKK
6	127	157	RRKKKSKKNKVDVDETARLQRRTRYLLIKIK
7	128	158	RRKKKSKKNKVDVDETARLQRRTRYLLIKIK
8	424	429	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-154	HB-PHD family protein