PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0398741
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 305aa    MW: 33158.5 Da    PI: 10.4482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0398741genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-31227285259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+++dp+++++tYe eH+h+
  RcHm_v2.0_Chr4g0398741 227 SDEFSWRKYGQKPIKGSPYPRGYYKCSSVrGCPARKHVERAQDDPTMLIVTYEAEHRHP 285
                             69*************************988****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MAIDLVRFSK IDDRTAMEEA ASAGLQSMEH LIRVLSSQTP SHNNLDCGEI TDFTVAKFKQ  60
FISVLNRTGH ARFRRGPVKQ PSDSTTTSSP PPPPPPNPVP PKPQVTLSLE TGNPNTNTNT  120
NTHSKSKDCL TLSPPMSTTS SFLSSITTGD GSVSNGKVFS SAAFPPAPAF SAGKPPLSQS  180
HRKRCHDELA TKTTSSGRCH CSKRRKSKVK RTVRVPAISS KIADIPSDEF SWRKYGQKPI  240
KGSPYPRGYY KCSSVRGCPA RKHVERAQDD PTMLIVTYEA EHRHPHPQQS NSVPAGVVGL  300
VFQSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-83WRKY family protein