PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0398661

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 276aa MW: 29026.2 Da PI: 9.6827

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0398661	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.4	5.9e-39	41	141	2	103
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s +++ss + RcHm_v2.0_Chr4g0398661 41 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGASSGA 126 78**************************************************************99999666.55555555544444 PP TCP 89 kaaksaakskksqks 103 ++ +++ ++++++++ RcHm_v2.0_Chr4g0398661 127 ASLSNSSTTSSNDHK 141 333333333333332 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MSNSEAPNNE LSNGAAAMMM ERQQQQQPTQ QQTAASNGVL AVKKPPSKDR HSKVDGRGRR 60 IRMPIICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTVSVSLRG 120 GASSGAASLS NSSTTSSNDH KPLLGGPTPF ILGKRMRADD DAKDADAHHG ATDGAGPGAV 180 SVVGHHSMSS MLGSAAQGGF WAPHYGQVWS FATTPPPEMM TQQQSVSQQH SLFLPQQPMG 240 EASAARVGNY LPGHLNLLAS LSGGHGNSGR REDDQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-63	TCP family protein