PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0398661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 276aa MW: 29026.2 Da PI: 9.6827 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.4 | 5.9e-39 | 41 | 141 | 2 | 103 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s +++ss + RcHm_v2.0_Chr4g0398661 41 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGASSGA 126 78**************************************************************99999666.55555555544444 PP TCP 89 kaaksaakskksqks 103 ++ +++ ++++++++ RcHm_v2.0_Chr4g0398661 127 ASLSNSSTTSSNDHK 141 333333333333332 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence |
MSNSEAPNNE LSNGAAAMMM ERQQQQQPTQ QQTAASNGVL AVKKPPSKDR HSKVDGRGRR 60 IRMPIICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTVSVSLRG 120 GASSGAASLS NSSTTSSNDH KPLLGGPTPF ILGKRMRADD DAKDADAHHG ATDGAGPGAV 180 SVVGHHSMSS MLGSAAQGGF WAPHYGQVWS FATTPPPEMM TQQQSVSQQH SLFLPQQPMG 240 EASAARVGNY LPGHLNLLAS LSGGHGNSGR REDDQR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 8e-63 | TCP family protein |