PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0398491
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 228aa    MW: 25898.3 Da    PI: 9.0188
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0398491genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.9e-1894148256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             rk+ ++tkeq + Le+ F+++++++ +++  LA  l+L+ rqV vWFqNrRa+ k
  RcHm_v2.0_Chr4g0398491  94 RKKLRLTKEQSTLLEDSFKRHSTLNPTQKHALAGLLNLKPRQVEVWFQNRRARTK 148
                             788899***********************************************98 PP
2HD-ZIP_I/II120.58.6e-3994182189
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             +kk+rl+keq++lLE+sF+++++L+p++K++la  L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en++L+ke +eL
  RcHm_v2.0_Chr4g0398491  94 RKKLRLTKEQSTLLEDSFKRHSTLNPTQKHALAGLLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCESLSDENRKLKKELQEL 180
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 re 89 
                             ++
  RcHm_v2.0_Chr4g0398491 181 KS 182
                             94 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MGDYDPEACN TSLQLGLGSG GYAPRQEMRT KDRPLVCLDL SFALRPKPEK IANLDDHMAN  60
GSSLKTNIFY EDEEDRRSTD HTDSEITNSK NGARKKLRLT KEQSTLLEDS FKRHSTLNPT  120
QKHALAGLLN LKPRQVEVWF QNRRARTKLK QTEVDCEFLK KWCESLSDEN RKLKKELQEL  180
KSLSVNGASS PLLTHQIPKT TMLTMCSSCE RKAKANDQYP NNEAAAKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143151RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-46HD-ZIP family protein