PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0397771
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 1126aa    MW: 124587 Da    PI: 6.7032
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0397771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.81.6e-21134235199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae++      +++++  ++l  +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+
  RcHm_v2.0_Chr4g0397771 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfNMQPPA-QELAARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDAVL 219
                             99*****************************9555544.48********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F   ++++++l+++++r+
  RcHm_v2.0_Chr4g0397771 220 FI--RDEKQQLLLGIRRA 235
                             **..5688889****997 PP
2Auxin_resp118.74.6e-39260343183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  RcHm_v2.0_Chr4g0397771 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCaNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343
                             79*******************************99779********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1126 aa     Download sequence    
MKQPANGGSS GAAALNSGEG GENVKIINPE LWQACAGPLV NLPPAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP SFDKDALLRS  120
DLALKSNKPQ PEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFNMQPP AQELAARDLH  180
DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDAVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVCANQLS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPPPFFRS KRPRQPGMPD DESSDLDNLF KRTMPWLGDD MCMKDPQVLP  420
GLSLVQWMNM QQNSSVASSM QPNYMHPSFS GSVMQNLPGV DLSRQMGLSA PQIPQPNNLQ  480
FNAQRLPQQV QQLDQLPNMQ STVNPIASMV QRQQQLGDMT QVPRQNLVNQ SLPSSQAQSP  540
LLQPQSLAQA NSILQQQSSA QNQLQRNLPQ NLQQHQQQQQ QQHQQQQQHQ QQNVGQNQQQ  600
NFIQAPQPDQ LNQQLHHLSD NQLQLQLLQK LQQHQQSYLA QQALQQQPTQ LLQLQDQQRH  660
LLDASQSFPR PSTPSQMQDM PLSAPTSHPQ SRAMPQQMTV NNISQPSGRF LHPQLQPKLQ  720
QQQPGMLAEM SGHMGLPPTG TTNQLSRAGS GIMAGVAGAG QSGLTDEVPS CSTSPSTNNC  780
PTVIQPLMNN RGRRNSLTGE DMAQSANMVI SSSALETTPS NGNSVKGFQH KSEVKPSVNI  840
TRNQSQAMLN PQTYLNGAAA QTDYLDTSSS TTSAGLSQND VHLQHNNTPL TFNPQSMLFR  900
EPSQEVEVQV DQRNNVSYGS NIDSQLGIPL SSDPLLEKGM VGIGKDFTNN LSSGMLGNFE  960
NSKDAQQELS SSMVSQSFGV PDMTFQSIDS TINDSSFLDS APWAPAAQFQ RMRTYTKVYK  1020
RGAVGRSIDI TRYSGYDELK HDLARRFGIE GQLEDRGRVG WKLVYVDHES DVLLVGDDPW  1080
EEFVNCVRCI KILSPQEVQQ MSLDGDFGGN AVLPNQACSS SDGGNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein