PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0392451
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 141aa    MW: 15355.8 Da    PI: 6.5383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0392451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-192272255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                            +y+GVr+++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g
  RcHm_v2.0_Chr4g0392451 22 RYRGVRRRP-WGKFAAEIRDS---NrHGARVWLGTFNTAEEAARAYDRAAYAMRG 72
                            6********.**********4...3234*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
MDEDHRGGKV QTGETKDAGE VRYRGVRRRP WGKFAAEIRD SNRHGARVWL GTFNTAEEAA  60
RAYDRAAYAM RGGLAILNFP NEYPSGTAVG GSSSSSSSAV SSSSSSSSSM QAGNQVLELE  120
YLDDRLLEEL LDCEDTKSKK K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-25ERF family protein