PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0392401
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 225aa    MW: 25174.6 Da    PI: 6.5328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0392401genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-0971118454
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             a+  rE+ RR+r+N++f  L  +l +    +  K +K +iL  A++ + +L
  RcHm_v2.0_Chr4g0392401  71 AKACREKLRRERLNDKFVDLSAVLEPG---RPAKTDKPAILDDAIRVLTQL 118
                             6778**********************8...89**************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MDGMEGIEDF FGYPSLIDEP QFPNFLWSNP SPSFPEIEFS ANSGVAAPSQ TQEKQCPRKR  60
GRTESWSGSG AKACREKLRR ERLNDKFVDL SAVLEPGRPA KTDKPAILDD AIRVLTQLRA  120
EAQELTQTNE KLLEEIKSLK AEKNELREEK VVLKADKEKL EQQLKAMTIP PSGFMPAHPA  180
GPAAYHPGAS KMAVYPSYGM IPMWHYLPPS TRDTSRDHEL RPPAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15763PRKRGRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.26e-81bHLH family protein