PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr4g0387371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 792aa MW: 86708.3 Da PI: 5.7683 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51 | 2.9e-16 | 496 | 534 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk RcHm_v2.0_Chr4g0387371 496 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 534 589**********************************96 PP | |||||||
2 | TCR | 50.6 | 3.9e-16 | 582 | 620 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs C+Ce+CkN RcHm_v2.0_Chr4g0387371 582 RHKRGCNCKKSNCLKKYCECYQGGVGCSIGCRCEGCKNA 620 589***********************************7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 792 aa Download sequence |
MDTPERNQIG TPKAKFEDSP VFNYINSLSP IKPVKSVHFT QTFSSLSFAS LPSVFTSPHV 60 SSHKESRFLK RHNASDDLSK PEFSPESGNK VCASEDAAQV YNNSSEIQED CVPAVPIGET 120 SVEPPSEHSK FVIELPRNLN YDCGSPDCNT SRCSIIKEDC DSELAEFSAS VAQYVQETSD 180 KCSSDDEAQQ QLICQIEQRK EGTGCDWDSL ISDAADILIF DSPNSTEAFK ELMNHSLDPM 240 TRFSTSIVPH LSQNNIGDEQ LVQVIDTVGS GQQLQIEDHS SQNGAANDLN ETEHMPNHLN 300 EYMVDNPNVK EDNKAETSMQ LTCKPVINLH RGLRRRCLDF EMTGARRKSF ENVSNFSSSM 360 LSQSNENVTT NDKPASMKPG GESSRCILPG IGLHLNALAT TSKDYKIIKN ENLASGRELS 420 FPNSNASIHS PTAAQGSVYE SFPSASSERD MDGAENGVQL LQDASQTSAL LANEDFNQNS 480 PKKKRRRAEH TGEGEACKRC NCKKSKCLKL YCECFAAGVY CIEPCSCQDC FNKPIHEDTV 540 LATRKQIESR NPLAFAPKVI RNSDSAAPEY GDESSKTPAS ARHKRGCNCK KSNCLKKYCE 600 CYQGGVGCSI GCRCEGCKNA FGTKEGSIIG TETELDEEET EAAEKSVADG DQQKNEIQKN 660 EEQTSALPTT PLRLSRQLVP VSFSSKNKPP RSSVFSIGGS SSGLYASQKL GKPNILRPQS 720 KFDQRHSQTV PEDEMPEILQ GNSSPTTGVK TVSPNSKRVS PPCTFGSSPG RRSGRKLILQ 780 SIPSFPSLTP QH |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 482 | 487 | KKKRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-169 | CPP family protein |