PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0387371

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CPP

Protein Properties

Length: 792aa MW: 86708.3 Da PI: 5.7683

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0387371	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51	2.9e-16	496	534	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk RcHm_v2.0_Chr4g0387371 496 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 534 589**********************************96 PP
2	TCR	50.6	3.9e-16	582	620	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs C+Ce+CkN RcHm_v2.0_Chr4g0387371 582 RHKRGCNCKKSNCLKKYCECYQGGVGCSIGCRCEGCKNA 620 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 792 aa Download sequence
MDTPERNQIG TPKAKFEDSP VFNYINSLSP IKPVKSVHFT QTFSSLSFAS LPSVFTSPHV 60 SSHKESRFLK RHNASDDLSK PEFSPESGNK VCASEDAAQV YNNSSEIQED CVPAVPIGET 120 SVEPPSEHSK FVIELPRNLN YDCGSPDCNT SRCSIIKEDC DSELAEFSAS VAQYVQETSD 180 KCSSDDEAQQ QLICQIEQRK EGTGCDWDSL ISDAADILIF DSPNSTEAFK ELMNHSLDPM 240 TRFSTSIVPH LSQNNIGDEQ LVQVIDTVGS GQQLQIEDHS SQNGAANDLN ETEHMPNHLN 300 EYMVDNPNVK EDNKAETSMQ LTCKPVINLH RGLRRRCLDF EMTGARRKSF ENVSNFSSSM 360 LSQSNENVTT NDKPASMKPG GESSRCILPG IGLHLNALAT TSKDYKIIKN ENLASGRELS 420 FPNSNASIHS PTAAQGSVYE SFPSASSERD MDGAENGVQL LQDASQTSAL LANEDFNQNS 480 PKKKRRRAEH TGEGEACKRC NCKKSKCLKL YCECFAAGVY CIEPCSCQDC FNKPIHEDTV 540 LATRKQIESR NPLAFAPKVI RNSDSAAPEY GDESSKTPAS ARHKRGCNCK KSNCLKKYCE 600 CYQGGVGCSI GCRCEGCKNA FGTKEGSIIG TETELDEEET EAAEKSVADG DQQKNEIQKN 660 EEQTSALPTT PLRLSRQLVP VSFSSKNKPP RSSVFSIGGS SSGLYASQKL GKPNILRPQS 720 KFDQRHSQTV PEDEMPEILQ GNSSPTTGVK TVSPNSKRVS PPCTFGSSPG RRSGRKLILQ 780 SIPSFPSLTP QH

Sequence ? help Back to Top

Protein Sequence Length: 792 aa Download sequence

MDTPERNQIG TPKAKFEDSP VFNYINSLSP IKPVKSVHFT QTFSSLSFAS LPSVFTSPHV  60
SSHKESRFLK RHNASDDLSK PEFSPESGNK VCASEDAAQV YNNSSEIQED CVPAVPIGET  120
SVEPPSEHSK FVIELPRNLN YDCGSPDCNT SRCSIIKEDC DSELAEFSAS VAQYVQETSD  180
KCSSDDEAQQ QLICQIEQRK EGTGCDWDSL ISDAADILIF DSPNSTEAFK ELMNHSLDPM  240
TRFSTSIVPH LSQNNIGDEQ LVQVIDTVGS GQQLQIEDHS SQNGAANDLN ETEHMPNHLN  300
EYMVDNPNVK EDNKAETSMQ LTCKPVINLH RGLRRRCLDF EMTGARRKSF ENVSNFSSSM  360
LSQSNENVTT NDKPASMKPG GESSRCILPG IGLHLNALAT TSKDYKIIKN ENLASGRELS  420
FPNSNASIHS PTAAQGSVYE SFPSASSERD MDGAENGVQL LQDASQTSAL LANEDFNQNS  480
PKKKRRRAEH TGEGEACKRC NCKKSKCLKL YCECFAAGVY CIEPCSCQDC FNKPIHEDTV  540
LATRKQIESR NPLAFAPKVI RNSDSAAPEY GDESSKTPAS ARHKRGCNCK KSNCLKKYCE  600
CYQGGVGCSI GCRCEGCKNA FGTKEGSIIG TETELDEEET EAAEKSVADG DQQKNEIQKN  660
EEQTSALPTT PLRLSRQLVP VSFSSKNKPP RSSVFSIGGS SSGLYASQKL GKPNILRPQS  720
KFDQRHSQTV PEDEMPEILQ GNSSPTTGVK TVSPNSKRVS PPCTFGSSPG RRSGRKLILQ  780
SIPSFPSLTP QH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	482	487	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-169	CPP family protein