PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0496791 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GeBP | ||||||||
Protein Properties | Length: 162aa MW: 18952.6 Da PI: 10.3369 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 53.6 | 6.1e-17 | 75 | 160 | 6 | 96 |
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 ws++Deiv+L Gli+f+ g + ++fye++k+++s + +q+ +K+++LK+K+ +++++ + ++ + ++ k+f+ls RcHm_v2.0_Chr3g0496791 75 TWSKDDEIVILGGLISFQ---GDEREYKSKEFYEYIKSRLS-QGDLNQVRDKVKSLKRKYMGMQNQ-TFLETFQKGRYQEMKVFNLS 156 5****************5...5445667899********98.56889******************9.566667777888999***** PP DUF573 93 kkiW 96 k+ W RcHm_v2.0_Chr3g0496791 157 KIYW 160 **99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MSNKTTEQTK KKRKKKKKKA RLAEETKQVD INGPEKENQS VDEEQDPKNK RVKVAASPAP 60 EENKSNTKSS CAGITWSKDD EIVILGGLIS FQGDEREYKS KEFYEYIKSR LSQGDLNQVR 120 DKVKSLKRKY MGMQNQTFLE TFQKGRYQEM KVFNLSKIYW VR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 16 | KKKRKKK |
2 | 10 | 18 | KKKRKKKKK |
3 | 11 | 17 | KKKRKKK |
4 | 11 | 19 | KKKRKKKKK |
5 | 11 | 15 | KKRKK |
6 | 12 | 18 | KKKRKKK |
7 | 13 | 19 | KKKRKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 1e-10 | GeBP family protein |