PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0496791
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GeBP
Protein Properties Length: 162aa    MW: 18952.6 Da    PI: 10.3369
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0496791genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57353.66.1e-1775160696
                  DUF573   6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                              ws++Deiv+L Gli+f+   g +     ++fye++k+++s +   +q+ +K+++LK+K+ +++++    + ++  + ++ k+f+ls
  RcHm_v2.0_Chr3g0496791  75 TWSKDDEIVILGGLISFQ---GDEREYKSKEFYEYIKSRLS-QGDLNQVRDKVKSLKRKYMGMQNQ-TFLETFQKGRYQEMKVFNLS 156
                             5****************5...5445667899********98.56889******************9.566667777888999***** PP

                  DUF573  93 kkiW 96 
                             k+ W
  RcHm_v2.0_Chr3g0496791 157 KIYW 160
                             **99 PP

Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MSNKTTEQTK KKRKKKKKKA RLAEETKQVD INGPEKENQS VDEEQDPKNK RVKVAASPAP  60
EENKSNTKSS CAGITWSKDD EIVILGGLIS FQGDEREYKS KEFYEYIKSR LSQGDLNQVR  120
DKVKSLKRKY MGMQNQTFLE TFQKGRYQEM KVFNLSKIYW VR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11016KKKRKKK
21018KKKRKKKKK
31117KKKRKKK
41119KKKRKKKKK
51115KKRKK
61218KKKRKKK
71319KKKRKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-10GeBP family protein