PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0493491
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 296aa    MW: 32533.1 Da    PI: 7.0545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0493491genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10208251755
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                             ++ ++RR+ri +++  L+el+P+ +      K++ +++LekA++Y+k Lq
  RcHm_v2.0_Chr3g0493491 208 IAAKNRRERISERLKILQELVPNgC------KVDLVTMLEKAINYVKFLQ 251
                             5679*******************77......******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MALAKDRMPH DSLQHQVISS YHHLSNNGFV FRSAASTTSC YQAEDDHDQV AAGHSVINFK  60
NNGYNSSFIH DNSASLLSFE KSNNGITHDN DSYNCISRID PVRLSGDFNC FQTASNNSSS  120
LSNPSNESHG SELGSAYGWL YSDATLMAES FPESETQVEA AFQKRPHKGE NMQPLKRQCT  180
SDVVAAATAT TKKPKPKSSS PSKDPQSIAA KNRRERISER LKILQELVPN GCKVDLVTML  240
EKAINYVKFL QLQVKVLATD EFWPVQGGKA PDISQVKEAI DAILSSQRDT SSSSKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.11e-55bHLH family protein