PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0492711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 29280.9 Da PI: 8.6859 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll ++ k +G + W++++++ g++R++k+c++rw++yl RcHm_v2.0_Chr3g0492711 13 KGAWTREEDDLLRHCMKTHGEEKWHRVPSKAGLNRCRKSCRLRWLNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E +l+ +++k+lG++ W++Ia ++ gRt++++k++w++ RcHm_v2.0_Chr3g0492711 66 RGGFTEDETDLIFRLHKLLGNR-WSLIAGRLS-GRTGNDVKNYWNS 109 788*******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MDGACNNNLG VRKGAWTREE DDLLRHCMKT HGEEKWHRVP SKAGLNRCRK SCRLRWLNYL 60 KPNIKRGGFT EDETDLIFRL HKLLGNRWSL IAGRLSGRTG NDVKNYWNSR LRLDSRIKNH 120 KSPESIKTTI IRPRPRTFSK SLYPLNKRAT ILKPFQFEEN FGRSTQASPT SENEIDSPKT 180 ILDDMDSSTV ERSTSDSCRM GFEEDLFTNF WVEDMAESSR TCFSFTEGEV SNVDFCFNME 240 LWNHPKEEEK T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-58 | MYB family protein |