PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0492261
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 319aa    MW: 35881.7 Da    PI: 6.7277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0492261genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12181206126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             y   +C+++ +tG+C yGd+CkF+H+
  RcHm_v2.0_Chr3g0492261 181 YQPDICKDYKETGYCGYGDSCKFMHD 206
                             67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MADSGGNAEP GEVCNFFRKP TTKRNFRKRT SEAEDDEESN SGSAVLPSQR KAAKPDGKLF  60
FSSGPSKSSA SDDGKVIFEF KSSKEIQVEH DSRATATLET ETEFSRDARA VRERVLKQSE  120
EALKGTGKST GNEKLYKGLH GYTDHKAGFR RELTVASEKA GGSHGPLRAS AHIRASTRFD  180
YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW DEAEKVRKRN LALREAGEEV  240
DDDDDNDDDD DDDLLPFACF ICRQTFVDPV VTKCNHYFCE HCALKHHSKN KKCFVCNKPT  300
LGIFNTAHEI RKRIAAEGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06420.21e-154C3H family protein