PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0488861
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 734aa    MW: 81669.8 Da    PI: 6.7815
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0488861genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.28e-202983256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            ++ +++t++q++ Le++F+k+++p+ ++r++L+k+lgL+ +q+k+WFqN+R++ k
  RcHm_v2.0_Chr3g0488861 29 KTYHRHTSQQIQHLEAFFKKCPHPDDNQRRQLSKELGLEPQQIKFWFQNKRTQTK 83
                            577899**********************************************988 PP
2START120.91.7e-382534723206
                             HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                   START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWde 74 
                             a +a++el++    +ep+W ks            vl  +  +k             ++e +++sg+    + +lv  +ld + +W  
  RcHm_v2.0_Chr3g0488861 253 AASAMEELIRILRINEPMWIKSNsdgrY------VLNHENYDKIfprayrlktssARIESSKDSGIASISALQLVDAFLDAN-KWVD 332
                             6789*******************66662......4444433333444445667888**************************.9999 PP

                             T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS
                   START  75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpS 150
                              ++    ka+t+ev++ g      g lqlm+ ++  lsplv  Rdf+f+R+++q + g+wvivdvS d  +  ++     R+ +lpS
  RcHm_v2.0_Chr3g0488861 333 LFPtivtKAKTIEVLQAGmfgtqsGCLQLMYGQMHILSPLVLpRDFYFLRFCQQIEVGTWVIVDVSYDCFKGSTT----QRSWRLPS 415
                             9988889*********************************966***********************998888774....78888*** PP

                             EEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 151 giliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                             g++i++++ng skvtw ehv++++++  h l+r lv  ++a ga++w  tlqr ce+
  RcHm_v2.0_Chr3g0488861 416 GCMIQDMPNGCSKVTWAEHVEVDDKTQtHRLYRDLVCGSVAYGAQRWIVTLQRMCER 472
                             ************************9998***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    
MDLPKGNGNE NGGASGDEQE ASNSRKRGKT YHRHTSQQIQ HLEAFFKKCP HPDDNQRRQL  60
SKELGLEPQQ IKFWFQNKRT QTKTQTERAD NSTLRAENSR IQCENYAIKE ALKNVICPAC  120
GGPPFGEQDR QKSLQKLHLE NAQLKEEANF EINNFLYIHY YFHHIYNDTL IHDKVATLLS  180
KFIGKPLSQI DSLTYAARSS PDVSPGLLIN QAMRSSDLSH EFINPTISNN AALAYYQVNA  240
IPETEKAVMI ETAASAMEEL IRILRINEPM WIKSNSDGRY VLNHENYDKI FPRAYRLKTS  300
SARIESSKDS GIASISALQL VDAFLDANKW VDLFPTIVTK AKTIEVLQAG MFGTQSGCLQ  360
LMYGQMHILS PLVLPRDFYF LRFCQQIEVG TWVIVDVSYD CFKGSTTQRS WRLPSGCMIQ  420
DMPNGCSKVT WAEHVEVDDK TQTHRLYRDL VCGSVAYGAQ RWIVTLQRMC ERFGCSFDDV  480
SSSSEFGAMF AMPQGRSSIM KLSHRMVRNF CGMLSMSGKL DFPQLSEANN SGVRVNVRKS  540
IDPGEPSGMV VVAATSLWLP LHSQDVFNFF TNEKTRVQWD VLSNGNPMNV IAHISTGAHP  600
GNCISIIQPF VPTEGNMLLL QESYIDTLGS MVIYAPVEVA TINIAIGGEV DSSDIPILPS  660
GFIISDDGRP DTGTSSNTNP AKSGGSLLTV AFQILVPFPS PSQVLNVESV ATVNTLISLT  720
VQKIKTALNC AGLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein