PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0488761

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 688aa MW: 78380.7 Da PI: 5.6596

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0488761	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.6	2e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelv +yLk+k++g+k+el evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWka RcHm_v2.0_Chr3g0488761 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EVIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKA 91 79**************************.99***********6434555777************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd++v s ++++vg+kktLv+y+grap+g +tdWvmheyrl RcHm_v2.0_Chr3g0488761 92 TGKDRKVNS-QTRAVGMKKTLVYYRGRAPHGIRTDWVMHEYRL 133 *****.9999*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH 120 GIRTDWVMHE YRLDERECET AQGLQVQDAY ALCRIFKKTA TGPKIGEHYG STSSTTNYQL 180 ASDHHSSSVE LYSDSRGDQD FESSRYNNQM AMNTPCSSNM VHTSSSSSFD HMGRKRDGKW 240 TQFLSKDAFN SFSSFPNQGA ISYPTSKVDI ALECARLQHR LTLPPLEVED FPHVGFTDFK 300 TLQYSDPGLE GTGTETDALQ EILSVAHVSQ EMINQSSNFA DQTWGSANYA PGANDFSFMV 360 DRDAHYNQIT THHDMNPMRY VDKPWENSYI RSIEIGDLED DDFRTDNTTE NLRWIGMSDK 420 DLEKSFTEEH KIVPIENIAS FRREEQGHEV QGDQTEHHSG MIKEFNDSET NDFSLGFIND 480 DPDENFLHDG NIEADYSPSP SFEVIEEIQV NHGMFVSTRQ VAKTFFHQIM PSETVKVHLN 540 PVLVHSYLDE KVDDAQENPK NIKGSFFEMF KEFVMEKFVE VTRSTNPWRK MASAMVCAVT 600 LLLMHTIYVG DRIEDEKLMD TFSTTTTTTA IVMEGKGTSN IISNKKKVCL VNIRGGSSCS 660 LFLKKIGIFL TVSLAVCTMW ANHNIITS

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH  120
GIRTDWVMHE YRLDERECET AQGLQVQDAY ALCRIFKKTA TGPKIGEHYG STSSTTNYQL  180
ASDHHSSSVE LYSDSRGDQD FESSRYNNQM AMNTPCSSNM VHTSSSSSFD HMGRKRDGKW  240
TQFLSKDAFN SFSSFPNQGA ISYPTSKVDI ALECARLQHR LTLPPLEVED FPHVGFTDFK  300
TLQYSDPGLE GTGTETDALQ EILSVAHVSQ EMINQSSNFA DQTWGSANYA PGANDFSFMV  360
DRDAHYNQIT THHDMNPMRY VDKPWENSYI RSIEIGDLED DDFRTDNTTE NLRWIGMSDK  420
DLEKSFTEEH KIVPIENIAS FRREEQGHEV QGDQTEHHSG MIKEFNDSET NDFSLGFIND  480
DPDENFLHDG NIEADYSPSP SFEVIEEIQV NHGMFVSTRQ VAKTFFHQIM PSETVKVHLN  540
PVLVHSYLDE KVDDAQENPK NIKGSFFEMF KEFVMEKFVE VTRSTNPWRK MASAMVCAVT  600
LLLMHTIYVG DRIEDEKLMD TFSTTTTTTA IVMEGKGTSN IISNKKKVCL VNIRGGSSCS  660
LFLKKIGIFL TVSLAVCTMW ANHNIITS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-154	NAC family protein