PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0487771
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 848aa    MW: 94404.8 Da    PI: 6.1651
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0487771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.1e-23134235199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+
  RcHm_v2.0_Chr3g0487771 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 219
                             99*****************************9777666.49********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F   ++++ +l+++++r+
  RcHm_v2.0_Chr3g0487771 220 FI--WNEKNQLLLGIRRA 235
                             **..8899999****997 PP
2Auxin_resp117.51.1e-38260343183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aaha st+s F+v+YnPras+seFv++++k+ ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  RcHm_v2.0_Chr3g0487771 260 AAHASSTNSCFTVFYNPRASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343
                             79*******************************986599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    
MKLSTSGFGR QEQEGGGGGG GAEKKCLNSE LWHACAGPLV SLPTSGSRVV YFPQGHSDQV  60
AATTNKQVDA HIPNYPALPP QLICQLHNVT MHADVETDEV YAQMTLQPLT PQEQKETFLP  120
IELGIPSKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSLQPP AQELIARDLH  180
DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRATRPQT  240
VMPSSVLSSD SMHIGLLAAA AHASSTNSCF TVFYNPRASP SEFVIPLSKY IKAVFHTRVS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGERQPRVSL  360
WEIEPLTTFP MYPSLFPLRL KRPWHPGASS MHDNRDEAAN SLMWLRGGTG EQGLQSMNFQ  420
AVGMFPWMQQ RLDSTFMGND PSQQYQAMLA AGLQNIGSGD QLRQHVMHFQ QPLQYLQQPG  480
SHNPLLQLQQ QVIPQSVPHN MLQAQPQVSM ENLPQQLLPP QFNNQTEEEP QQQHNTYHDA  540
RKVQREQLHQ SQQMNLPSPS FSKTDFADSS TKLSGSTTSR QNTLGSLCPE GNNNLLNISR  600
AGHSLPAEQL PQQSWAPKFA YAQANDFANP MSFTPYDEKD NAVEQENCNS DSQNPTLFGV  660
NIESSGLVFP TTVPNFATSS NDADMPMPLG DSGFQSSLYG CMQGSSELLH GAGQVDPPTP  720
NCTFVKVYKS GSVGRSLDIS RFSSYNQLRE ELAQMFGIEG KLEDCLRSGW QLVFVDREND  780
VLLLGDDPWE SFVNNVWYIK ILSPEDVHKM GDQAVESFSP NVGQRLNSSG NETQDHISGL  840
PSLGSHEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein