PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0485711
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 447aa    MW: 49490.8 Da    PI: 6.9336
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0485711genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30174232259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +Dg++WrKYGqK+ kg+++pr+YYrCt+  gCpv+k+v+r aed++++++tYeg+Hnh+
  RcHm_v2.0_Chr3g0485711 174 RDGCQWRKYGQKMAKGNPCPRAYYRCTMFaGCPVRKQVQRMAEDKTILITTYEGNHNHP 232
                             7**************************988****************************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    
MDEQRCDLKY LHSDQSFLGL STSSDHRLVE PPIKEETLFK EIKEVDFFSN NRLPDQPAPG  60
HAELTTLQLQ VELQREYEEN QKLRTMLDQI TKSYNGLQAQ LRMIRLQEQL QICAEDSINL  120
DPKLSFLHDD QYPKSSSHHD HDQEQVLAAT DHDQVPSRRA RVSVRARSEA PMIRDGCQWR  180
KYGQKMAKGN PCPRAYYRCT MFAGCPVRKQ VQRMAEDKTI LITTYEGNHN HPLPAAAISM  240
ANTTSAAAAM LISGSTTSKE AHHHLTHPTG LFSSLQPLYG SSMATFSTSA PFPTITLDMT  300
RTPNPNPNPM QFMDSSATFP NPLQGNSHPL IGHPMCLNFP QHNHAALTPA AMQLAEQPHG  360
SMVETITAAI TSDPKFTTAL AAAISSRMNN VENINAGLHG NTNGISSLNS NGNGVAQHYL  420
APHSFLNPVP LSPPPNPACM MHGVYMQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-55WRKY family protein