PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0485711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 447aa MW: 49490.8 Da PI: 6.9336 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.7e-30 | 174 | 232 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+ gCpv+k+v+r aed++++++tYeg+Hnh+ RcHm_v2.0_Chr3g0485711 174 RDGCQWRKYGQKMAKGNPCPRAYYRCTMFaGCPVRKQVQRMAEDKTILITTYEGNHNHP 232 7**************************988****************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence |
MDEQRCDLKY LHSDQSFLGL STSSDHRLVE PPIKEETLFK EIKEVDFFSN NRLPDQPAPG 60 HAELTTLQLQ VELQREYEEN QKLRTMLDQI TKSYNGLQAQ LRMIRLQEQL QICAEDSINL 120 DPKLSFLHDD QYPKSSSHHD HDQEQVLAAT DHDQVPSRRA RVSVRARSEA PMIRDGCQWR 180 KYGQKMAKGN PCPRAYYRCT MFAGCPVRKQ VQRMAEDKTI LITTYEGNHN HPLPAAAISM 240 ANTTSAAAAM LISGSTTSKE AHHHLTHPTG LFSSLQPLYG SSMATFSTSA PFPTITLDMT 300 RTPNPNPNPM QFMDSSATFP NPLQGNSHPL IGHPMCLNFP QHNHAALTPA AMQLAEQPHG 360 SMVETITAAI TSDPKFTTAL AAAISSRMNN VENINAGLHG NTNGISSLNS NGNGVAQHYL 420 APHSFLNPVP LSPPPNPACM MHGVYMQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 4e-55 | WRKY family protein |