PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0485691

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 434aa MW: 47596.4 Da PI: 6.7897

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0485691	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.3	1e-30	173	231	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+ gCpv+k+v+r aed++++++tYeg+Hnh+ RcHm_v2.0_Chr3g0485691 173 SDGCQWRKYGQKMAKGNPCPRAYYRCTMVaGCPVRKQVQRLAEDKTILITTYEGNHNHP 231 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MDEQRCDLKH LHSDQSFLGL GSSSDHRLVE SPIKEETLFK EIKEVDFLSN NRLPNQPAPG 60 HAELTTLQLQ VELQREHEEN QKLRTMLDQI TKSYNGLQAQ LRMIRLQDQL QTCAEDSNLD 120 PKLSFLHDDQ SPKSSSHHDH DQEQVLAVTD HDQVPLRRAR VSVRARSEAP MISDGCQWRK 180 YGQKMAKGNP CPRAYYRCTM VAGCPVRKQV QRLAEDKTIL ITTYEGNHNH PLPPAALSMA 240 NTTSAAAAML ISGSTTSKEA HHHLTHPTGL FSSLQPLYGS SMATFSTSAP FPTITLDMTR 300 TPNPNPNPMQ FMDSSATFPN PLQGNSHPLI GHPMCLNFPQ HNHAALTPAA MQLAEQPHGS 360 MVETITAAIT SDPKFTTALA AAISSRMNNV ENINAGLQGN TNGISSLNSN GNEVCAALSG 420 SPQLPQSCTT FSTT

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MDEQRCDLKH LHSDQSFLGL GSSSDHRLVE SPIKEETLFK EIKEVDFLSN NRLPNQPAPG  60
HAELTTLQLQ VELQREHEEN QKLRTMLDQI TKSYNGLQAQ LRMIRLQDQL QTCAEDSNLD  120
PKLSFLHDDQ SPKSSSHHDH DQEQVLAVTD HDQVPLRRAR VSVRARSEAP MISDGCQWRK  180
YGQKMAKGNP CPRAYYRCTM VAGCPVRKQV QRLAEDKTIL ITTYEGNHNH PLPPAALSMA  240
NTTSAAAAML ISGSTTSKEA HHHLTHPTGL FSSLQPLYGS SMATFSTSAP FPTITLDMTR  300
TPNPNPNPMQ FMDSSATFPN PLQGNSHPLI GHPMCLNFPQ HNHAALTPAA MQLAEQPHGS  360
MVETITAAIT SDPKFTTALA AAISSRMNNV ENINAGLQGN TNGISSLNSN GNEVCAALSG  420
SPQLPQSCTT FSTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01720.1	4e-62	WRKY family protein