PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr3g0483031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 77aa MW: 8683.04 Da PI: 10.6165 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.5 | 8.4e-29 | 23 | 72 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien s rqvtfskRr g++KKA ELSvLCdae+aviifs+tgklye s RcHm_v2.0_Chr3g0483031 23 KKIENLSSRQVTFSKRRSGLFKKAAELSVLCDAEIAVIIFSQTGKLYEQS 72 78*********************************************966 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 77 aa Download sequence |
MLGNDTERNS QTRKMGRGKI EIKKIENLSS RQVTFSKRRS GLFKKAAELS VLCDAEIAVI 60 IFSQTGKLYE QSSTRCV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13790.1 | 4e-30 | MIKC_MADS family protein |